Question: Create local toolshed using Planemo
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varuna.peiris • 0 wrote:
Hello, I tried to create galaxy local toolshed using planemo. I used command as follows,
- create virtual env – virtualenv .venv; . .venv/bin/activate
- Install planemo – pip install planemo
- To confiuring a shed account – planemo config_init
- Create a repository – planemo shed_init --name=seqtk_seq \ --owner=planemo \ --description=seqtk_seq \ --long_description="Tool that converts FASTQ to FASTA files using seqtk" \ --category="Fastq Manipulation" planemo shed_create --shed_target local
This stage giving two errors time to time,
- Failed to include files for [{'source': ''}] Problem encountered executing action for one or more repositories.**
- Could not update seqtk_seq HTTPConnectionPool(host='localhost', port=9009): Max retries exceeded with url: /api/repositories?key=dc5c7cd5cf56a2f44aacf755109e63b9 (Caused by NewConnectionError('<urllib3.connection.httpconnection object="" at="" 0x7fca11b72310="">: Failed to establish a new connection: [Errno 111] Connection refused',)), 0 attempts left: HTTPConnectionPool(host='localhost', port=9009): Max retries exceeded with url: /api/categories?key=dc5c7cd5cf56a2f44aacf755109e63b9 (Caused by NewConnectionError('<urllib3.connection.httpconnection object="" at="" 0x7fca11b72350="">: Failed to establish a new connection: [Errno 111] Connection refused',)), 0 attempts left:
If any one have idea about this errors or creating galaxy local toolshed using planemo, could you please instruct to me???? Thank you.
edit moderator: I have fixed the style and the image links
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modified 9 months ago
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Martin Čech ♦♦ 4.9k
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9 months ago by
varuna.peiris • 0
