Question: MultiQC not recognising data set collection - Fix implemented at usegalaxy.org
0
gravatar for Taamslab
12 weeks ago by
Taamslab0
Taamslab0 wrote:

Attempting to run multiqc on a list of dataset pairs from an RNA seq experiment. However it does not recognise the txt dataset collection.

is there anyway around this?

fastqc multiqc • 113 views
ADD COMMENTlink modified 12 weeks ago by Jennifer Hillman Jackson24k • written 12 weeks ago by Taamslab0
0
gravatar for Jennifer Hillman Jackson
12 weeks ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

The fix for this problem has been made (https://github.com/galaxyproject/galaxy/issues/5040) and will be applied to the Galaxy Main server very soon (likely today). I'll write back with an update once applied and tested.

Thanks for reporting the problem! Jen, Galaxy team

ADD COMMENTlink written 12 weeks ago by Jennifer Hillman Jackson24k
0
gravatar for Jennifer Hillman Jackson
12 weeks ago by
United States
Jennifer Hillman Jackson24k wrote:

Update 12-01-17 2pm EST

Galaxy Main at https://usegalaxy.org has been updated.

Please rerun your job and let us know if problems continue. We are also testing today for a few bug fixes and will report back if any issues are still present.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 12 weeks ago by Jennifer Hillman Jackson24k

Hi,

I'm trying to do a similar quality check on a collection of dataset pairs (4 samples, each with F and R read sequence files- 8 files total). FastQC accepted the collection and output two collections: one for raw data and one for webpages, and manual inspections makes it seem like it worked. However, multiQC does not recognize either FastQC-output collections in the results file field ('collections' icon selected). It just says, "No txt or tabular dataset collections available."

Am I doing something wrong, or is this the same bug as in the OP?

ADD REPLYlink written 11 weeks ago by cwg0
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