Question: Download all history including data collection and nested data collections
0
gravatar for thomas.nigel.lawson
6 months ago by
thomas.nigel.lawson10 wrote:

Hi all,

I was wondering if anybody knows the easiest and quickest way of downloading the whole history with every result file from the history (including data collections)?

When I use History options-->Export history to file

On my local instance the data (e.g. results in .tsv) are not exported with the history.

I notice though in 17.09 that a folder called datasets is created but that does not include the data collections only individual data files that are not within collections.

history galaxy xml • 226 views
ADD COMMENTlink modified 6 months ago by jmchilton1.1k • written 6 months ago by thomas.nigel.lawson10
3
gravatar for jmchilton
6 months ago by
jmchilton1.1k
United States
jmchilton1.1k wrote:

Unfortunately this is not possible yet, history export doesn't include collections. There is an open pull request from the community here (https://github.com/galaxyproject/galaxy/pull/4532) so we are getting closer. Hopefully this will be available in 18.01. Sorry.

ADD COMMENTlink written 6 months ago by jmchilton1.1k
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