Free Bayes Exit code error

Question: Free Bayes Exit code error

14 months ago by

Quadram Institute of BioSciences

Hi guys

Has anyone come across this error?

Fatal error: Exit code 25 () unable to find FASTA index entry for '10' unable to find FASTA index entry for '1' unable to find FASTA index entry for '11' unable to find FASTA index entry for '12' unable to find FASTA index entry for '13' unable to find FASTA index entry for '14' unable to find FASTA index entry for '15' unable to find FASTA index entry for '16' unable to find FASTA index entry for '17' unable to find FASTA index entry for '18' unable to find FASTA index entry for '19' unable to find FASTA index entry for '20' unable to find FASTA index entry for '2' unable to find FASTA index entry for '21' unable to find FASTA index entry for '22' unable to find FASTA index entry for '3' unable to find FASTA index entry for '4' unable to find FASTA index entry for '5' unable to find FASTA index entry for '6' unable to find FASTA index entry for '7' unable to find FASTA index entry for '8' unable to find FASTA index entry for '9' unable to find FASTA index entry for 'MT' unable to find FASTA index entry for 'X' unable to find FASTA index entry for 'Y'

Thanks for the advice. Much appreciated

rna-seq software error galaxy bam • 674 views

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modified 14 months ago by Jennifer Hillman Jackson ♦ 25k • written 14 months ago by federico.bernuzzi • 20

14 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello -

These are warnings from the tool indicating a genome mismatch problem. This wouldn't necessarily be the root cause (or only cause) of why the job ended in an error though. It depends not only on the tool but the settings. But if a genome mismatch problem is present, even if a job is technically "successful" (green in the history) - the results will not be valid.

First, correct the genome mismatch between the inputs, this is how: Mismatched Chromosome identifiers

Then rerun and see what type of error you get (if any). It can be posted back here (click on the bug icon to view/copy) or sent in as a bug report if working at https://usegalaxy.org.

Hope this helps!

Jen, Galaxy team

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ADD COMMENT • link written 14 months ago by Jennifer Hillman Jackson ♦ 25k

Thanks Jen, much appreciated

ADD REPLY • link written 14 months ago by federico.bernuzzi • 20

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