Dear Galaxy users and developers,
I installed the tool CrossMap in our local Galaxy instance and I am getting following error:
Traceback (most recent call last): File "/opt/galaxy/galaxy/lib/galaxy/jobs/runners/__init__.py", line 170, in prepare_job job_wrapper.prepare() File "/opt/galaxy/galaxy/lib/galaxy/jobs/__init__.py", line 864, in prepare self.command_line, self.extra_filenames, self.environment_variables = tool_evaluator.build() File "/opt/galaxy/galaxy/lib/galaxy/tools/evaluation.py", line 454, in build raise e NotFound: cannot find 'replace' while searching for 'replace'
We are running the newest Galaxy version and all CrossMap dependencies seem to be met, at least according to the toolshed.
I would greatly appreciate some suggestions on how to resolve this.
Thanks and best regards, Christopher Previti