Question: Tools for error correction and data normalisation
0
gravatar for samdkhot
16 months ago by
samdkhot0
samdkhot0 wrote:

Any NGS data correction tool like Quake, DecGPU , Shrec and SOAPec on the usegalaxy sever tools.

assembly • 343 views
ADD COMMENTlink modified 16 months ago by colindaven0 • written 16 months ago by samdkhot0
0
gravatar for Bjoern Gruening
16 months ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Have a look at deeptools it can correct GC bias, QC, normalization and plotting for you.

Hope this helps, Bjoern

ADD COMMENTlink written 16 months ago by Bjoern Gruening5.1k
0
gravatar for colindaven
16 months ago by
colindaven0
colindaven0 wrote:

Hi Samdkhot,

as far as I know, there are no read error correction programs on the Galaxy site (just checked the toolshed). ARe you looking to correct Illumina reads ? Have you checked the bioconda site to see if any are present there ? That would at least make them easier to install.

https://bioconda.github.io/recipes.html#recipes

Colin

ADD COMMENTlink written 16 months ago by colindaven0

Cool! Thanks for referencing Bioconda :)

ADD REPLYlink written 16 months ago by Bjoern Gruening5.1k
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