Tools for error correction and data normalisation

Question: Tools for error correction and data normalisation

17 months ago by

samdkhot • 0

samdkhot • 0 wrote:

Any NGS data correction tool like Quake, DecGPU , Shrec and SOAPec on the usegalaxy sever tools.

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modified 16 months ago by colindaven • 0 • written 17 months ago by samdkhot • 0

17 months ago by

Bjoern Gruening ♦ 5.1k

Germany

Bjoern Gruening ♦ 5.1k wrote:

Have a look at deeptools it can correct GC bias, QC, normalization and plotting for you.

Hope this helps, Bjoern

ADD COMMENT • link written 17 months ago by Bjoern Gruening ♦ 5.1k

16 months ago by

colindaven • 0

colindaven • 0 wrote:

Hi Samdkhot,

as far as I know, there are no read error correction programs on the Galaxy site (just checked the toolshed). ARe you looking to correct Illumina reads ? Have you checked the bioconda site to see if any are present there ? That would at least make them easier to install.

https://bioconda.github.io/recipes.html#recipes

Colin

ADD COMMENT • link written 16 months ago by colindaven • 0

Cool! Thanks for referencing Bioconda :)

ADD REPLY • link written 16 months ago by Bjoern Gruening ♦ 5.1k

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