I have searched all over and I cannot find a solution to this. When I run the FastQ groomer I have installed through the tool shed, I get this in the history:
File "/project/sysbio/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/e4d28c94242d/fastq_groomer/fastq_groomer.py", line 29
print "Groomed %i %s reads into %s reads." % ( read_count + 1, input_type, output_type ) ^
SyntaxError: invalid syntax
I have python 2.7.8 and run galaxy locally. I have not included a: from __future__ import print_function anywhere. When running the FastQ Groomer tool, my inputs are:
Sanger & Illumina 1.8+
Any help will be appreciated, thanks.