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Question: Making a Pedigree file
0
gravatar for pcm20
20 months ago by
pcm20 • 10
pcm20 • 10 wrote:

Hi I'm working through the Exome sequencing analysis tutorial and at one point I need to make a PED file, but I can't find the right tool for it. Can anyone point me in the right direction? Thanks
ped • 646 views
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modified 20 months ago by Guy Reeves • 1.0k • written 20 months ago by pcm20 • 10

There is no tool for this you will need to create it in a text editor outside galaxy and then upload it. It is a simple tabular format described in http://www.shapeit.fr/pages/m02_formats/pedmap.html I think the first 5 columns are obligatory but the rest are not. It kind of depends what you want to do with it. Cheers

Guy

ADD REPLY • link written 20 months ago by Guy Reeves • 1.0k
1

Thanks for your help, much appreciated!

ADD REPLY • link written 20 months ago by pcm20 • 10

if you are following a tutorial isn't the file avalible?

ADD REPLY • link written 20 months ago by Guy Reeves • 1.0k
0
gravatar for Guy Reeves
20 months ago by
Guy Reeves • 1.0k
Germany
Guy Reeves • 1.0k wrote:

There is no tool for this you will need to create it in a text editor outside galaxy and then upload it. It is a simple tabular format described in http://www.shapeit.fr/pages/m02_formats/pedmap.html I think the first 5 columns are obligatory but the rest are not. It kind of depends what you want to do with it. Cheers
ADD COMMENT • link written 20 months ago by Guy Reeves • 1.0k
0
gravatar for Guy Reeves
20 months ago by
Guy Reeves • 1.0k
Germany
Guy Reeves • 1.0k wrote:

There is no tool for this you will need to create it in a text editor outside galaxy and then upload it. It is a simple tabular format described in http://www.shapeit.fr/pages/m02_formats/pedmap.html I think the first 5 columns are obligatory but the rest are not. It kind of depends what you want to do with it. Cheers
ADD COMMENT • link written 20 months ago by Guy Reeves • 1.0k
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