Question: What Galaxy tools can substitute VTTools for preprocessing VCF file before the SNPEff data input?
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gravatar for msprindzhuk
3 months ago by
msprindzhuk40
msprindzhuk40 wrote:

What Galaxy tools can substitute VTTools for preprocessing VCF file before the SNPEff data input?

ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson22k • written 3 months ago by msprindzhuk40
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gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

This tool installs fine on a 17.01 local (default) with conda use available for managed dependencies.

Does this tool still not install into your instance? Have the dependency issues been corrected for the other tool install problems?

We should troubleshoot the conda/dependency resolution configuration first, in the original thread (https://biostar.usegalaxy.org/p/22159). Otherwise, we are starting from scratch with each tool that will not install in a different post. If additional tools will not install, just add them as a comment to the same post as extra info for troubleshooting.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson22k
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