Question: What Galaxy tools can substitute VTTools for preprocessing VCF file before the SNPEff data input?
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gravatar for msprindzhuk
11 days ago by
msprindzhuk0 wrote:

What Galaxy tools can substitute VTTools for preprocessing VCF file before the SNPEff data input?

ADD COMMENTlink modified 11 days ago by Jennifer Hillman Jackson21k • written 11 days ago by msprindzhuk0
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gravatar for Jennifer Hillman Jackson
11 days ago by
United States
Jennifer Hillman Jackson21k wrote:

Hello,

This tool installs fine on a 17.01 local (default) with conda use available for managed dependencies.

Does this tool still not install into your instance? Have the dependency issues been corrected for the other tool install problems?

We should troubleshoot the conda/dependency resolution configuration first, in the original thread (https://biostar.usegalaxy.org/p/22159). Otherwise, we are starting from scratch with each tool that will not install in a different post. If additional tools will not install, just add them as a comment to the same post as extra info for troubleshooting.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 11 days ago by Jennifer Hillman Jackson21k
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