Question: What Galaxy tools can substitute VTTools for preprocessing VCF file before the SNPEff data input?
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gravatar for msprindzhuk
6 weeks ago by
msprindzhuk20
msprindzhuk20 wrote:

What Galaxy tools can substitute VTTools for preprocessing VCF file before the SNPEff data input?

ADD COMMENTlink modified 6 weeks ago by Jennifer Hillman Jackson22k • written 6 weeks ago by msprindzhuk20
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gravatar for Jennifer Hillman Jackson
6 weeks ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

This tool installs fine on a 17.01 local (default) with conda use available for managed dependencies.

Does this tool still not install into your instance? Have the dependency issues been corrected for the other tool install problems?

We should troubleshoot the conda/dependency resolution configuration first, in the original thread (https://biostar.usegalaxy.org/p/22159). Otherwise, we are starting from scratch with each tool that will not install in a different post. If additional tools will not install, just add them as a comment to the same post as extra info for troubleshooting.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 6 weeks ago by Jennifer Hillman Jackson22k
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