I've been analysing some RNA-seq data in triplicate and I want to compare replicates by generating scatter plots. This can be done by CummeRbund but I have little experience with R and Galaxy has usually helped me out in these situations. However, the Galaxy version of CummeRbund insists on a SQlite database but I analysed my RNAseq using Cufflinks on my local machine so I didn't have the option of ticking a box for SQlite output. Can CummeRbund on Galaxy function with standard Cuffdiff output? And if so how can this work on Galaxy?
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Question: Can standard CuffDiff output be used as input into CummeRbund on Galaxy?
21 months ago by
connorrogerson • 0
connorrogerson • 0 wrote:
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