Question: Indel Output - What Is This Mystery Column?
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gravatar for John David Osborne
7.7 years ago by
John David Osborne • 160 wrote:
Hi, I was running an indel analysis on galaxy and I got a file as output that has rows that look like this: fly2 9829 9830 I ATACTCCAA 79 Can anybody tell me what the last column (79) means? There is obviously an insertion at 9829 with those nucleotides, but I'm not sure what the 79 refers to even after reading the linked documentation. Is it the number of reads that had this? A quality score? -John
galaxy • 796 views
ADD COMMENT • link • modified 7.7 years ago by Kelly Vincent • 340 • written 7.7 years ago by John David Osborne • 160
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gravatar for Kelly Vincent
7.7 years ago by
Kelly Vincent • 340
Kelly Vincent • 340 wrote:
John, It is the number of reads that had this exact insertion, as you guessed. Let us know if you have further questions. Regards, Kelly
ADD COMMENT • link written 7.7 years ago by Kelly Vincent • 340
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