Question: Indel Output - What Is This Mystery Column?
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gravatar for John David Osborne
7.7 years ago by
John David Osborne160 wrote:
Hi, I was running an indel analysis on galaxy and I got a file as output that has rows that look like this: fly2 9829 9830 I ATACTCCAA 79 Can anybody tell me what the last column (79) means? There is obviously an insertion at 9829 with those nucleotides, but I'm not sure what the 79 refers to even after reading the linked documentation. Is it the number of reads that had this? A quality score? -John
galaxy • 796 views
ADD COMMENTlink modified 7.7 years ago by Kelly Vincent340 • written 7.7 years ago by John David Osborne160
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gravatar for Kelly Vincent
7.7 years ago by
Kelly Vincent340
Kelly Vincent340 wrote:
John, It is the number of reads that had this exact insertion, as you guessed. Let us know if you have further questions. Regards, Kelly
ADD COMMENTlink written 7.7 years ago by Kelly Vincent340
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