Question: Metagenomics Workflow error "Draw Phylogeny"
0
gravatar for mark.gasser
21 months ago by
mark.gasser0 wrote:

I am unclear about this problem and what I would need to do to my data in order to fix.

Using "Draw Phylogeny" tool

ERROR: tree definition terminated prematurely (defined a complete tree, but more characters remain in the buffer). Tree string position 3148 ?(((((((((((n:20)Chroococcales:42

I have Illumina reads that I performed Megablast, fetched taxonomic representation, and then "find lowest diagnostic rank". I tried "Draw phylogeny" from that dataset when this error occurred.

I performed this workflow on 9 samples. 7 were successful and 2 had this error message. Thank you for your time and help.

ADD COMMENTlink modified 21 months ago by Jennifer Hillman Jackson25k • written 21 months ago by mark.gasser0
0
gravatar for Jennifer Hillman Jackson
21 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello Mark,

I replied to your bug report with the details. In short, the tool is running out of memory with the given parameters. I made suggestions specific to your data in my direct reply.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 21 months ago by Jennifer Hillman Jackson25k
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