Question: Rsync with G2 no options available
2
gravatar for djevo1
13 months ago by
djevo160
djevo160 wrote:

I have a production galaxy with the rsync data manager installed. When I attempt to fetch a genome I can search, however the tool shows in red no options available.

rna-seq genome galaxy index • 386 views
ADD COMMENTlink modified 7 weeks ago by Daniel Blankenberg ♦♦ 1.7k • written 13 months ago by djevo160
1
gravatar for Daniel Blankenberg
7 weeks ago by
Daniel Blankenberg ♦♦ 1.7k
United States
Daniel Blankenberg ♦♦ 1.7k wrote:

See also: https://github.com/galaxyproject/tools-iuc/pull/1520

ADD COMMENTlink written 7 weeks ago by Daniel Blankenberg ♦♦ 1.7k
0
gravatar for Jennifer Hillman Jackson
13 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

The rsync Data Manager has been problematic. It will very likely be replaced near term (still in progress).

For now, I suggest fetching fasta datasets directly from the external source and creating your own indexes from there. Fetch the genome, index for Sam (allow to complete), then Picard (allow to complete), index for 2bit (can be run concurrent and no downstream indexes are dependent), and then continue with any other indexes associated with the tools that will be in use.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 13 months ago by Jennifer Hillman Jackson23k

"Rsync with g2" is behaving the same for me. Any chance it may have been replaced by a new tool yet? Thanks.

ADD REPLYlink written 10 weeks ago by skhan20
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