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Question: Rsync with G2 no options available
2
gravatar for djevo1
2.1 years ago by
djevo1 • 60
djevo1 • 60 wrote:

I have a production galaxy with the rsync data manager installed. When I attempt to fetch a genome I can search, however the tool shows in red no options available.
rna-seq genome galaxy index • 817 views
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modified 13 months ago by Daniel Blankenberg ♦♦ 1.7k • written 2.1 years ago by djevo1 • 60
1
gravatar for Daniel Blankenberg
13 months ago by
Daniel Blankenberg ♦♦ 1.7k
United States
Daniel Blankenberg ♦♦ 1.7k wrote:

See also: https://github.com/galaxyproject/tools-iuc/pull/1520
ADD COMMENT • link written 13 months ago by Daniel Blankenberg ♦♦ 1.7k
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gravatar for Jennifer Hillman Jackson
2.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The rsync Data Manager has been problematic. It will very likely be replaced near term (still in progress).

For now, I suggest fetching fasta datasets directly from the external source and creating your own indexes from there. Fetch the genome, index for Sam (allow to complete), then Picard (allow to complete), index for 2bit (can be run concurrent and no downstream indexes are dependent), and then continue with any other indexes associated with the tools that will be in use.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.1 years ago by Jennifer Hillman Jackson ♦ 25k

"Rsync with g2" is behaving the same for me. Any chance it may have been replaced by a new tool yet? Thanks.

ADD REPLY • link written 14 months ago by skhan • 40
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