"Maximun information quality filtering" trimming step in Trimmomatic

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Question: "Maximun information quality filtering" trimming step in Trimmomatic

2.2 years ago by

Carlos Andrés Caicedo • 0

Colombia/Medellín

Carlos Andrés Caicedo • 0 wrote:

Why is not present the Trimmomatic operation MAXINFO at the Galaxy instance of Trimmomatic?

The "Maximun information quality filtering" (MAXINFO) performs an adaptive quality trim, balancing the benefits of retaining longer reads against the costs of retaining bases with errors.

The information about this trimming step can be found at: http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf http://bioinformatics.oxfordjournals.org/content/30/15/2114

Thanks

Carlos

options tool-form tool parameters trimmomatic • 690 views

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modified 2.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.2 years ago by Carlos Andrés Caicedo • 0

2.2 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This is how the tool authors implemented the wrapper. If you want to know why - or if they are planning on changes - contact them directly through the Tool Shed. http://usegalaxy.org/toolshed

Log in, navigate to the tool, and in the upper right corner pull down menu is the option to send them an inquiry. Include a link to this post if you want them to reply here.

Thanks, Jen, Galaxy team

ADD COMMENT • link written 2.2 years ago by Jennifer Hillman Jackson ♦ 25k

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