Question: Dataset generation errors
0
gravatar for yychangsd
15 months ago by
yychangsd30
yychangsd30 wrote:

I got an error when running my local galaxy instance.

Dataset generation errors Dataset 39: workflow output

Tool execution generated the following error message:

Fatal error: Matched on error

Thu Sep 15 09:21:40 PDT 2016 Running subset of jobs: qc-pe qc-star-pe

can not submit qsub job and return a id

can not submit qsub job and return a id

Thu Sep 15 09:21:40 PDT 2016 Running subset of jobs: post-RSEM-group

Thu Sep 15 09:21:40 PDT 2016 Write sh file to /home/oasis/data/galaxy-new/database/job_working_directory/000/91/WF-sh/post-RSEM-group.Sample-all-transcript-matrix-group.sh

Thu Sep 15 09:21:40 PDT 2016 post-RSEM-group,Sample-all-transcript-matrix-group: change status to ready

can not submit qsub job and return a id upload failed: ./20160915092140680467028365.tar.gz to s3://jcvi-weizhong-lab/RNA-seq-portal/job-results/20160915092140680467028365/20160915092140680467028365.tar.gz Unable to locate credentials

And in my poster.log

it shows:

galaxy.jobs.runners.local DEBUG 2016-09-15 09:50:01,764 (95) executing job script: /home/oasis/data/galaxy-new/database/job_working_directory/000/95/galaxy_95.sh

galaxy.jobs DEBUG 2016-09-15 09:50:01,772 (95) Persisting job destination (destination id: local)

galaxy.jobs.runners.local DEBUG 2016-09-15 09:50:04,456 execution finished: /home/oasis/data/galaxy-new/database/job_working_directory/000/95/galaxy_95.sh

galaxy.jobs.output_checker INFO 2016-09-15 09:50:04,483 Job 95: Fatal error: Matched on error

galaxy.jobs.output_checker DEBUG 2016-09-15 09:50:04,483 Tool exit code indicates an error, failing job.

galaxy.jobs DEBUG 2016-09-15 09:50:04,520 setting dataset state to ERROR

galaxy.jobs INFO 2016-09-15 09:50:04,626 Collecting metrics for Job 95

galaxy.jobs DEBUG 2016-09-15 09:50:04,635 job 95 ended (finish() executed in (179.054 ms))

galaxy.datatypes.metadata DEBUG 2016-09-15 09:50:04,635 Cleaning up external metadata files

Any suggestions would be greatly appreciated~~

Thanks so much~~

error admin job galaxy local • 394 views
ADD COMMENTlink written 15 months ago by yychangsd30

Related post (may be merged): https://biostar.usegalaxy.org/p/edit/19535/

ADD REPLYlink written 15 months ago by Jennifer Hillman Jackson23k
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