Question: Problem running BWA-MEM mapping
0
gravatar for brijesh.yta
2.4 years ago by
brijesh.yta0 wrote:

I am trying to run BWA-MEM mapping in galaxy. I have uploaded FASTQ files using fastqcssanger and hg19 human genome. When I clicked on Map with BWA-MEM option, and tried to choose files from drop down menu, I couldn't find the files. It say "no fastqcssanger database available". But my history shows fastqcssanger files uploaded and in green. Could anyone help me to solve this problem. Thank you

bwa • 1.0k views
ADD COMMENTlink modified 2.4 years ago • written 2.4 years ago by brijesh.yta0
0
gravatar for Jennifer Hillman Jackson
2.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This datatype is not supported by the tool at http://usegalaxy.org. The input must be fastqsanger.

Perhaps double check the type and correct if Illumina?

If really fastqcssanger, check the Tool Shed for other mapper options for use in a local or cloud Galaxy.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.4 years ago by Jennifer Hillman Jackson25k
0
gravatar for brijesh.yta
2.4 years ago by
brijesh.yta0 wrote:

Fixed it! Thank you!

ADD COMMENTlink written 2.4 years ago by brijesh.yta0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 152 users visited in the last hour