Question: Fwd: P_Ids And Cufflinks
gravatar for David Matthews
8.0 years ago by
United Kingdom
David Matthews630 wrote:
Just a thought, I notice that in the ensemble.gtf file the protein ids are listed as follows: chr11 protein_coding CDS 129060 129388 . - 0 gene_id "ENSG00000230724"; transcript_id "ENST00000382784"; exon_number "1"; gene_name "AC069287.3"; transcript_name "AC069287.3-201"; protein_id "ENSP00000372234" Is the p_id problem in cufflinks because the ensemble.gtf file uses the word protein_id and not p_id??? Cheers David __________________________________ Dr David A. Matthews Senior Lecturer in Virology Room E49 Department of Cellular and Molecular Medicine, School of Medical Sciences University Walk, University of Bristol Bristol. BS8 1TD U.K. Tel. +44 117 3312058
rna-seq cufflinks • 608 views
ADD COMMENTlink written 8.0 years ago by David Matthews630
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour