Question: Fwd: P_Ids And Cufflinks
0
David Matthews • 630 wrote:
Just a thought, I notice that in the ensemble.gtf file the protein ids
are listed as follows:
chr11 protein_coding CDS 129060 129388 . - 0
gene_id "ENSG00000230724"; transcript_id "ENST00000382784";
exon_number "1"; gene_name "AC069287.3"; transcript_name
"AC069287.3-201"; protein_id "ENSP00000372234"
Is the p_id problem in cufflinks because the ensemble.gtf file uses
the word protein_id and not p_id???
Cheers
David
__________________________________
Dr David A. Matthews
Senior Lecturer in Virology
Room E49
Department of Cellular and Molecular Medicine,
School of Medical Sciences
University Walk,
University of Bristol
Bristol.
BS8 1TD
U.K.
Tel. +44 117 3312058
D.A.Matthews@bristol.ac.uk