Question: Get Options from a File During Job Creation
0
gravatar for bornea27
23 months ago by
bornea2720
United States
bornea2720 wrote:

I want to get my tool to quickly read the dataset selected and get options for a param type="select" prior to submitting a job. I am attempting to use a <code file="get_info.py"/> that will return the options but no matter how I try to parse in the inputs variable name in  <param name="bait1" type="select" display="radio" dynamic_options="get_info(input)"/> I get a HistoryDatasetAssociation or NoneType for the input. How can I make it so rather than attempting to bring in the association I am getting the actual dataset.

galaxy • 445 views
ADD COMMENTlink modified 23 months ago by bensellak.taoufik0 • written 23 months ago by bornea2720

Hi

It is difficult to help without seeing more of your code. Also, have you looked into the 'data_ref' attribute?

Regards, Hans-Rudolf

ADD REPLYlink written 23 months ago by Hotz, Hans-Rudolf1.7k
0
gravatar for bensellak.taoufik
23 months ago by
Morroco
bensellak.taoufik0 wrote:

Hello,

If i did understand your aime you could define some configfile tags something like :

 

<configfile name="getparamone">

#set paramone = ''

##inside your code to extract your param (cheetah code/python)

paramone ${paramone}

<configfile>

in your command you pass the param as

--configfile ${getparamone}

hope that hepls.

ADD COMMENTlink modified 23 months ago • written 23 months ago by bensellak.taoufik0
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