I am struggling with ODoSE since a while with no success.
I cannot find a way so use the select genomes function (that's what I see).
Also, I tried to upload a .faa of the genomes I am working with, this worked. If I then try to use the function "Identify core.." I always get the same error:
<class 'zipfile.BadZipfile'> Automatic bug submission reported: BadZipfile @ /usr/lib/python2.7/zipfile.py:_RealGetContents An error occurred Traceback (most recent call last): File "/work/odosenl/galaxy-dist/tools/odosenl/wrapper.py", line 32, in <module> MODULE.main(sys.argv[3:]) File "/work/odosenl/odose.nl/run_orthomcl.py", line 448, in main proteome_files = extract_archive_of_files(args.proteinzip, temp_dir) File "/work/odosenl/odose.nl/shared.py", line 90, in extract_archive_of_files read_handle = ZipFile(archive_file, mode='r') File "/usr/lib/python2.7/zipfile.py", line 714, in __init__ self._GetContents() File "/usr/lib/python2.7/zipfile.py", line 748, in _GetContents self._RealGetContents() File "/usr/lib/python2.7/zipfile.py", line 763, in _RealGetContents raise BadZipfile, "File is not a zip file" BadZipfile: File is not a zip file
Is there any manual/Tutorial for this program, I looked a lot around, but I could not find any.