Question: Troubles With Batch Download
gravatar for Cristian Rojas
8.1 years ago by
Cristian Rojas70 wrote:
Hi everybody, sorry for bother youwith a silly question. I have a list with a LOT of rice loci (LOC_Os...) uploaded to Galaxy as a unique file, and would like to obtain just the sequence of them. I tried to use the Gramene, but I couldnt. Any tip? Thanks Cristian
galaxy • 645 views
ADD COMMENTlink modified 8.1 years ago by Jennifer Hillman Jackson25k • written 8.1 years ago by Cristian Rojas70
gravatar for Jennifer Hillman Jackson
8.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Cristian, Was the problem at GrameneMart Central because of the data content or because of another problem? Are you using Galaxy main and the "Get data" tool? Data seems to be loading fine from that source. If the problem was content, this would be an alternate annotation data source (ftp the files to your own server, then load them into Galaxy): nnotation_dbs/pseudomolecules/version_6.1/ We do have plans to add the rice reference genome soon. This will mean that if you have the genome coordinates for a gene locus (not just the identifiers), the tool "Fetch Sequences" could be used to extract fasta sequence. Hopefully this helps, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 8.1 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 171 users visited in the last hour