Question: Is there a command line example/instruction of the CloudMap workflow?
0
gravatar for setempler
2.8 years ago by
setempler0
Germany
setempler0 wrote:

Hello,

this question was asked on https://www.biostars.org/p/158324/ initially, following a recommendation I put it here, too:

Dear community,

I would like to implement a command line shell or python wrapper for the CloudMap workflow (www: http://hobertlab.org/cloudmap/ galaxy implementation: https://usegalaxy.org/u/gm2123/p/cloudmap). Therefore I want to know which software tools are used and what are the minimum/basic arguments for this analysis. I know I can use the workflow tools from galaxyproject.org to investigate the code, but:

I would like to know if there exists a a web post which shows the summarized command line tool chain used for the CloudMap workflow.

I would appreciate if people could share links or even post an example!

Many thanks.

shell workflow cloudmap • 618 views
ADD COMMENTlink modified 2.8 years ago by Wolfgang Maier550 • written 2.8 years ago by setempler0
1
gravatar for Wolfgang Maier
2.8 years ago by
Germany
Wolfgang Maier550 wrote:

Hello Sven,

I don't have an answer to your question, but do you know MiModD (http://www.celegans.de/en/mimodd)?

It's quite similar to and compatible with CloudMap, but a lot faster. Can be used as a command line package or from Galaxy.

 

ADD COMMENTlink written 2.8 years ago by Wolfgang Maier550
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