I'm having some trouble setting up a Galaxy instance on our workstation (which I ssh into).
I have created a user specifically for Galaxy as described in the installation documents but am having trouble getting it to work. When using run.sh to start up the server I get this error (pastebin as wall of text)
However when I run as root with sudo the server starts up (but localhost:8080 isnt displaying the galaxy page, as any user).
Any ideas what could be going wrong? Galaxy doesn't start as root without using sudo, and both expat and elementtree are installed in both python 2.6 and 2.7, with correct permissions.
Thanks in advance.
Solution - Turns out this was a bug specific to python 2.7.3 which my debian distro shipped with. Using 2.7.10 in a virtual environment created with pythonbrew solved this problem.