Question: How to get "Pseudo reads BAM file"?
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gravatar for clp8132
3.9 years ago by
clp8132 • 0
clp8132 • 0 wrote:

Galaxy Workflow ' imported: RNA-seq differential analysis (single-end short reads, 2 conditions, 2 replicates)'

 

Step 6: Input dataset

Pseudo reads BAM file

select at runtime

Reads computationally generated from genome sequence to avoid zero coverage genes.

thank you

 

rna-seq • 774 views
ADD COMMENT • link • modified 3.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.9 years ago by clp8132 • 0
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gravatar for Jennifer Hillman Jackson
3.9 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Unfortunately the workflow authors did not provide more details or sample data (that I can locate). I am not able to determine where it was sourced. A guess about what this input represents, from the workflow context, could be made - but that is a poor answer and certainly not something to act on. Perhaps try a different RNA-seq protocol with more complete documentation around it. See our wiki for several under the "Learn" hub.

Best, Jen, Galaxy team

ADD COMMENT • link modified 3.9 years ago • written 3.9 years ago by Jennifer Hillman Jackson ♦ 25k
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