User: marcocassone

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Posts by marcocassone

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HOW can select MAF <0,01 in a VCF files without use ANNOVAR?
... HOW can select variations with MAF <0,01 in a VCF files without use ANNOVAR? I have problem with EXOME analysis when I create a VCF files i can't selection MAF<0,001 because ANNOVAR is a FAKE in Galaxy, what's kind of tool i can use ? ...
new mutations exac snp exome rare variant written 13 months ago by marcocassone0 • updated 13 months ago by Jennifer Hillman Jackson23k
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Answer: A: Empty VCF file returned by ANNOVAR on Galaxy
... i understod that ANNOVAR is crazy with galaxy, fake GALAXY tool.................................................. ...
written 13 months ago by marcocassone0
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Answer: A: Empty VCF file returned by ANNOVAR on Galaxy
... Log: tool progress Log: tool progress Error: invalid record in VCF file: the GT specifier is not present in the FORMAT string: 0.0 . DP=1;I16=1,0,0,0,38,1444,0,0,0,0,0,0,0,0,0,0;QS=1,0;MQ0F=1;EFF=intron_variant(MODIFIER|||n.100+74 this happens if i want a tabular file. ...
written 13 months ago by marcocassone0
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Answer: A: Empty VCF file returned by ANNOVAR on Galaxy
... tell me the correct options to work with ANNOVAR please or a methods to selection variant from VCF files, is one months that i am trying.but i can't ...
written 13 months ago by marcocassone0
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Answer: A: Empty VCF file returned by ANNOVAR on Galaxy
... SNP effect work very well but Annovar only VCF empty files. i need a tool to select DNA variation with minor allele frequency < 0,01 relative to ExAC after MPileup, when i have created a VCF Files Annovar in Galaxy is a fake i think o it's possible that i am a very bad with this tool. ...
written 13 months ago by marcocassone0
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Answer: A: Empty VCF file returned by ANNOVAR on Galaxy
... Log: tool progress Log: tool progress Unknown option: vcfinput Usage: table_annovar.pl [arguments] Optional arguments: -h, --help print help message -m, --man ...
written 13 months ago by marcocassone0
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Answer: A: Empty VCF file returned by ANNOVAR on Galaxy
... Annovar don't fuction also with hg19 why? thanks ...
written 14 months ago by marcocassone0
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Answer: A: Annovar not Running Annotation on VCF
... Annovar in Galaxy.org don't function why? thanks VCF file empty ever ...
written 14 months ago by marcocassone0
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Answer: A: Annovar Annotate VCF tool - empty tabular file
... i have the same problem... please help me ...
written 14 months ago by marcocassone0
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Answer: A: Whole Exome Sequencing
... excuse me i am new here now i am starting to use bioinformatic tools for WGS and WES. How can I filter variants on the base the frequency allele of 1000 genome? ...
written 14 months ago by marcocassone0

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