User: Neil.Burdett@csiro.au

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Posts by Neil.Burdett@csiro.au

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Comment: C: Download Contains The Html File
... For those following this thread. I, finally, managed to stop zipping up the html file by commenting out the "try" block (around line 260) in ~/lib/galaxy/datatypes/data.py Thanks Neil To: galaxy-user@lists.bx.psu.edu Subject: RE: download contains the html file Sorry I should have provided more ...
written 3.9 years ago by Neil.Burdett@csiro.au310
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Answer: A: Download Contains The Html File
... Sorry I should have provided more detail. After I have executed my tool, I write the html into the dataset_'id'.dat file listing all the output files which I store in extra_files_path (named as dataset_id_files in the database). Thus when I do a download I only want the files stored in "dataset_id_f ...
written 3.9 years ago by Neil.Burdett@csiro.au310
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Download Contains The Html File
... Hi, I have a tool that works well. However, when I download the results, the results are zipped up but included into the zip file is the *.html file (with the same name as the tool output) do you know how I can stop this from being zipped up? Thanks Neil ...
written 3.9 years ago by Neil.Burdett@csiro.au310
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Monitoring Usage
... Hi, I have a local install of Galaxy. Is there something that I could use to monitor the usage on the system, users logged i/using the tools, CPU usage, disk space etc Thanks Neil ...
galaxy written 3.9 years ago by Neil.Burdett@csiro.au310 • updated 3.9 years ago by Enis Afgan590
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Answer: A: Is Anyone Using Galaxy With Neuroscience ?
... Hi Zeeshan, We're starting to use Galaxy fro neuro-imaging projects particularly detecting the onset on Alzheimer's disease by quantifying the loss of grey matter in the cortex, so we have methods to register and segment brains etc ... Neil To: galaxy-user@lists.bx.psu.edu Subject: ...
written 4.3 years ago by Neil.Burdett@csiro.au310
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Answer: A: History Not Updating For Multiple Instances Of Galaxy
... Further, when I try "register" I add an email address and password, but the system still doesn't log me in Maybe this is a database configuration issue? I didn't think I'd need to state any specific entries in universe as I am using physically separate directories i.e. /home/galaxy/galaxy-cte/ .. ...
written 4.8 years ago by Neil.Burdett@csiro.au310
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History Not Updating For Multiple Instances Of Galaxy
... Hi, I have three instances of galaxy running on the same Linux box. My "/etc/apache2/sites-available/default" is: RewriteEngine on RewriteRule ^/galaxy-csiro$ /galaxy-csiro/ [R] RewriteRule ^/galaxy-csiro/static/style/(.*) /home/galaxy /galaxy-csiro/static/june_2007_style/blue/$ ...
galaxy written 4.8 years ago by Neil.Burdett@csiro.au310
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Workflows
... Hi Sorry if these questions are obvious but I just don't know how to find the answers. I'm trying to get one of the API examples to work in http://wiki.galaxyproject.org/Learn/API/Examples . I've got my API key but how do I get/find the workflow id (f2db41e1fa331b3e in the examples). I've crea ...
galaxy written 4.9 years ago by Neil.Burdett@csiro.au310 • updated 4.9 years ago by Geert Vandeweyer30
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Uploading Files To History Via Api
... Hi, It seems the API documentation is a bit scarce. I'd like to upload a file from the command line using the API rather than the GUI, but would like to see the file in the history. Does anyone have any information how to do this/ any tools that are available. Thanks Neil ...
local data api upload written 4.9 years ago by Neil.Burdett@csiro.au310 • updated 3.1 years ago by Jennifer Hillman Jackson23k
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Comment: C: Batch Jobs...
... Thanks for the help Ross. Any chance you can point me to the examples you mentioned? Thanks again Neil To: Burdett, Neil (ICT Centre, Herston - RBWH) Cc: galaxy-user Subject: Re: [galaxy-user] Upload files from filesystem paths Hi, Neal, Thanks - that sounds interesting. Like I said, composite d ...
written 4.9 years ago by Neil.Burdett@csiro.au310

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