User: nishashoolini.phd

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Posts by nishashoolini.phd

<prev • 5 results • page 1 of 1 • next >
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Answer: A: unable to run tophat on trim galore processed reads
... thanks jen i am trying again ...
written 12 months ago by nishashoolini.phd0
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cufdiff output-cutoff pvalue and parameters for differential expression
... dear all i am analysing rna seq data using galaxy pipeline for differntial expression. i have run cufffidff. in cuffdiff output for studying which genes are differntially expressing what **all parameters** should be taken care of. i came across one thing from other posts that p value < .05. what ...
cuffdiff pvalue significant written 15 months ago by nishashoolini.phd0 • updated 15 months ago by Devon Ryan1.8k
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unable to upload data form ebi
... dear galaxy team i am unable t download data form ebi website using get data tool on galaxy home page. please help ...
datasets ebi-sra getdata upload written 15 months ago by nishashoolini.phd0 • updated 15 months ago by Galaxy Community ♦♦ 0
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Answer: A: cuffdiff outpuit interpretation, splicing and promoter differntial expression
... hi thank you jen for your time and reply. i might be bothering you too much but once again different transcripts pooled into same gene on the basis of usage of common promoter lie in each entry of promoter diff exp file?....how does it shows promoter diff expn.? did see the link provided. kindly ...
written 15 months ago by nishashoolini.phd0
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cuffdiff outpuit interpretation, splicing and promoter differntial expression
... dear all i have read many posts but still unable to understand that in cuffdiff output what does promoter differntial expression file explains? i request you to please provide me some input over the same. does it lists no. of genes using common promoter? what does the fpkm value shows..is it for th ...
cuffdiff output fpkm expression rna-seq written 15 months ago by nishashoolini.phd0

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