User: patterh

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patterh20
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Posts by patterh

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Comment: C: bcftools view will not read VCF file
... Thanks Jen! Appreciated. Kind regards, Hugh ...
written 2.1 years ago by patterh20
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bcftools view will not read VCF file
... Hi, BCFtools view allows the reversible conversion between BCF and VCF formats. In Galaxy the default input is BCF format, but the input type can be changed by selecting "yes" at the "The input is VCF instead of BCF" dropdown listbox. However, even with VCF input selected, the items selectable fro ...
input vcf software quirk bcf bfctools written 2.1 years ago by patterh20 • updated 2.1 years ago by Jennifer Hillman Jackson25k
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Spades and Ion Torrent Bam files
... In V3.5.0 of Spades on Galaxy, there is a button "Libraries are IonTorrent reads?". Even if you click "Yes", Galaxy will still not allow one to select a bam format file as input. In the Spades command line, the option --iontorrent will allow bam format input. Am I missing something in Galaxy? H ...
spades bam assembly input fastq written 2.1 years ago by patterh20 • updated 2.1 years ago by Jennifer Hillman Jackson25k

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