User: ChickenRNA

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ChickenRNA50
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Posts by ChickenRNA

<prev • 35 results • page 1 of 4 • next >
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Answer: C: Top Hat Error
... Please check this post, This is how I got it to work https://biostar.usegalaxy.org/p/19953/#20011 ...
written 13 months ago by ChickenRNA50
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Comment: C: CuffDiff error on Local Galaxy
... More specifically this is the error that I have for CummberRbund version 2.8.2 "* installing *source* package ‘bitops’ ... ** package ‘bitops’ successfully unpacked and MD5 sums checked ** libs In file included from bit-ops.c:1:0: /home/vythegi/galaxy1111/database/dependencies/R/3.1.2/iuc/package_r_ ...
written 14 months ago by ChickenRNA50
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Comment: C: CuffDiff error on Local Galaxy
... Thanks Devon, I am not sure how to repair it. I tried uninstalling and reinstalling, but that doesn't seem to work. Any suggestions? ...
written 14 months ago by ChickenRNA50
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Comment: C: CuffDiff error on Local Galaxy
... When I go look in my "manage installed tools" there are a few tools that says "installed, missing tool dependencies", and Cummerbund is one of them. When looking at the specific error for the cummerbund it says "This tool dependency's required tool dependency cummerRbund version 2.8.2 has a status e ...
written 14 months ago by ChickenRNA50
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CuffDiff error on Local Galaxy
... HI, I am running local instance of Galaxy on my linux mint system. When I try to run CuffDiff, I am getting the following error (see below) When I look in the folder "/home/vythegi/galaxy1111/database/jobs_directory/000/" I cannot find a folder named (150" or tool_script.sh. I would really apprec ...
cuffdiff local rna-seq written 14 months ago by ChickenRNA50
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Answer: A: HISAT Error on local Galaxy
... Hi Jennifer Thanks for your prompt response. I did have both of those installed and they were working without any trouble from what I can tell. From reading previous posts on Biostar, I found [this post][1], and it was very similar to what I was dealing with, so I tried to follow their instruction ...
written 14 months ago by ChickenRNA50
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HISAT Error on local Galaxy
... Hi, I am trying to do RNA analysis on local instance of Galaxy running in Linux mint. I have tried assembling the sequences using TopHat and got the error (see post: https://biostar.usegalaxy.org/p/19570/). I tried running HISAT, as I thought it may be a TopHat problem with the resources available ...
local hisat rna-seq written 14 months ago by ChickenRNA50
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Comment: A: Top Hat Error
... Hi, I have tried resetting the meta-data like suggested, but it keeps running for greater than a week, and it doesn't seem to finish on my local instance of Galaxy. I tried uninstalling and reinstalling a new instance of local galaxy, and I am getting the same error. I am running the local instan ...
written 14 months ago by ChickenRNA50
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Comment: C: Top Hat Error
... Hi Jennifer, The auto-detect for the metadata, has been running for 3 days and the status is"meta-data being detected". I had only selected this option for one dataset, so I am not sure why its taking this long. I am not sure I should proceed, and any guidance you can provide will be greatly appr ...
written 14 months ago by ChickenRNA50
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Comment: C: Top Hat Error
... Thank you Jennifer. I will keep you updated on the process. Is performing "auto-detect" for just sample set sufficient, or do I need to do it individually for every sample set I have? Thanks again for your prompt answers ...
written 14 months ago by ChickenRNA50

Latest awards to ChickenRNA

Scholar 13 months ago, created an answer that has been accepted. For C: Top Hat Error
Supporter 14 months ago, voted at least 25 times.

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