User: shraddha.adamane

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Posts by shraddha.adamane

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Comment: C: How to create GFF file for HT seq
... Okk.. I will wait.. Thanks .. ...
written 17 months ago by shraddha.adamane10
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Answer: A: How to create GFF file for HT seq
... HI Devon Ryan, I guess I tried uploading both Ensembl and UCSC GTF files. And The errors I got are : **Error with Ensembl GTF file**: error An error occurred with this dataset: Fatal error: Unknown error occured 0 GFF lines processed. Warning: No features of type 'exon' found. Error occured when pr ...
written 17 months ago by shraddha.adamane10
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Comment: C: How to create GFF file for HT seq
... chr1 hg19_knownGene exon 11874 12227 0.000000 + . gene_id "uc001aaa.3"; transcript_id "uc001aaa.3"; chr1 hg19_knownGene exon 12613 12721 0.000000 + . gene_id "uc001aaa.3"; transcript_id "uc001aaa.3"; chr1 hg19_knownGene exon 13221 14409 0.000000 + . gene_id "uc001aaa.3"; transcript_id "uc001aaa.3" ...
written 17 months ago by shraddha.adamane10
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Comment: C: How to create GFF file for HT seq
... http://genome.ucsc.edu/cgi-bin/hgTables ...
written 17 months ago by shraddha.adamane10
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Comment: C: How to create GFF file for HT seq
... hi Devon Ryan. I was finally able to upload the GTF file. But I am getting error, which is as follow: "Fatal error: Unknown error occured 0 GFF lines processed. Warning: No features of type 'exon' found. Error occured when processing SAM input (record #583 in file /galaxy-repl/main/files/016/925/da ...
written 17 months ago by shraddha.adamane10
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Answer: A: How to create GFF file for HT seq
... Hello Devon Ryan. I have got the GFF file. But I am not getting how to upload it from my computer into the RNAanalysis--> HTseq--> GFF file folder. It will be great if you could let me know this. Thanks ...
written 17 months ago by shraddha.adamane10
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Answer: A: How to create GFF file for HT seq
... Hi Devon Ryan, I guess it has been aligned to hg19 (Human Genome version 19). ...
written 17 months ago by shraddha.adamane10
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How to create GFF file for HT seq
... Hello there, I am dealing with some RNA seq data and was trying to run the raw data in bam file format thorugh HTseq. But it demands for GFF file format. So I wanted to know: What is GFF file and why do I need to create it? How am I suppose to create it? How to know if I have correctly created and r ...
bam rna-seq written 17 months ago by shraddha.adamane10 • updated 14 days ago by Joey Zou0

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