User: Mark Lindsay

gravatar for Mark Lindsay
Mark Lindsay70
Reputation:
70
Status:
Trusted
Location:
United Kingdom
Last seen:
3 months ago
Joined:
6 years ago
Email:
m**********@bath.ac.uk

Posts by Mark Lindsay

<prev • 16 results • page 1 of 2 • next >
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CuffDiff not working with CXB files
... Hi when attempting to run CuffDiff with Cuffquant files, all the conditions end up loading condition 2 i.e. if you select CXB files with condition 1 and 2, condition 1 defaults to condition 2 so you end up comparing condition 2 and 2. Hopefully this makes sense!!! ...
dataset input rna-seq select error written 3 months ago by Mark Lindsay70 • updated 10 weeks ago by Jennifer Hillman Jackson25k
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(Closed) Error with DiffBind
... I successfully employed Diffbind to compare 5 replicates (control vs treatment) approximately 10 days ago. However, when I have attempted to repeat this using the same samples and even reducing the number to 3 replicates I keep receiving the Error message 'This job was terminated because it used mor ...
chip-seq tool-error memory diffbind written 5 months ago by Mark Lindsay70 • updated 5 months ago by Jennifer Hillman Jackson25k
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Tophat not Running
... Hi I have had Tophat queued for running on the main Galaxy Instance since last Friday (5 days). I just wondered if there are any issue or is there just a backlog? Many thanks Mark ...
rna-seq written 18 months ago by Mark Lindsay70 • updated 18 months ago by Jennifer Hillman Jackson25k
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Answer: A: Loss of Histories
... Hi Dannon managed to find the lost histories by going to the cog button on the analysis page and then scrolling down to saved histories. For some reason these were available on the view all histories options. Many thanks Mark ...
written 18 months ago by Mark Lindsay70
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Loss of Histories
... Dear All in the last week I keep finding that my histories are disappearing from the public Galaxy website. Just wondered if there are any current problems? Best wishes Mark ...
galaxy usegalaxy.org account histories written 19 months ago by Mark Lindsay70
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Answer: A: Segmentation and fatal error: Exit code 139 when running CuffDiff/CuffQuant/Cuff
... Hi Jen with regards to your questions 1.  this is a new local. The instance can run Cufflinks and Bowtie. 2.  this maybe the problem. Tools were installed through the toolshed although when I examine the Admin UI many are saying missing tool or repository dependencies 3.  I believe it is the cur ...
written 2.6 years ago by Mark Lindsay70
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Segmentation and fatal error: Exit code 139 when running CuffDiff/CuffQuant/Cuffnorm
... I have downloaded the latest version (2.2.1.3) of Cuffdiff/Cuffnorm/Cuffquant on a local instance of Galaxy but keep getting a fatal error: Exit Code 139 and a linked segmentation fault: 11 almost immediately after running these programmes. This occurs even when running a single BAM file. I can see ...
galaxy written 2.6 years ago by Mark Lindsay70
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Deleting histories from Galaxy
... I have deleted and purged various histories from Galaxy but this does not appear free up additional server space. Is there something additional that is required? Mark       ...
galaxy written 2.7 years ago by Mark Lindsay70 • updated 2.7 years ago by Jennifer Hillman Jackson25k
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Problems with Cufflinks 2.2.1.0 on local instance
... I have installed the latest version of Cufflinks on my local instance of Galaxy. Whenever I run the tools i.e. CuffDiff I get the following message. Any ideas on how to fix this would be greatly appreciated. Fatal error: Exit code 139 () [09:52:43] Loading reference annotation. [09:52:47] Inspecti ...
cufflinks written 3.2 years ago by Mark Lindsay70 • updated 3.2 years ago by michimaurin20
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Loading human hg38 onto local instance
... Dear Galaxy Team I have a Galaxy Instance loaded onto my computer and have been trying to create a DBkey and install the latest human hg38 genome using the 'Create DBkey and Reference Genome' data manager. However, I keep receiving the following error message (this worked fine when downloading the ...
hg38 local install genome datamanagers written 3.8 years ago by Mark Lindsay70 • updated 3.8 years ago by Jennifer Hillman Jackson25k

Latest awards to Mark Lindsay

Popular Question 5 months ago, created a question with more than 1,000 views. For Problems with BlastP
Popular Question 18 months ago, created a question with more than 1,000 views. For Loading human hg38 onto local instance
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Loading human hg38 onto local instance

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