User: gskbioinfo143

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Posts by gskbioinfo143

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MACS shows error for MEDIP Seq Data
... Dear sir, I tried to do peak calling for Medipseq Data using MACS. i have done mapping using Bowtie2 for Treatment files (Paired End). and Normal Control files (paired end). then gave these files as input for MACS and MACS2 but even if mfold values i changed the Analysis fails. Need help Thanks ...
macs medipseq written 13 months ago by gskbioinfo1430
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Comment: C: SICER error: SICER is not available for the genome
... hi i tried to analyze two datasets SRX681547 and SRX681548 keeping one as treatment and other as control to find unique enriched regions or peaks using SICER tool but analysis fails(hg19 database). Need help please the analysis is at shashikanth20@gmail.com account ...
written 16 months ago by gskbioinfo1430
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SICER error: SICER is not available for the genome
... Hi im getting error while using SICER on data sets SRX681547 and SRX681548 it shows **SICER is not available for the genome** . i checked this web https://wiki.galaxyproject.org/Support#Tool_doesn.27t_recognize_dataset and edited the genome Hg38 to all data but still the error shows the same. ple ...
database genome sicer enhancement written 16 months ago by gskbioinfo1430 • updated 16 months ago by Jennifer Hillman Jackson23k
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Comment: C: peaking calling in MACS shows error?
... Hi SICER tool in galaxy is not working it shows "SICER is not available for the genome" when i input treatment and control bed file and click execute. i have seen this post https://biostar.usegalaxy.org/p/18663/ but need help how to resolve this please Please need help Thank you ...
written 16 months ago by gskbioinfo1430
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Comment: C: peaking calling in MACS shows error?
... thanks i changed MFOLD settings its working ...
written 16 months ago by gskbioinfo1430
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Comment: C: peaking calling in MACS shows error?
... my Galaxy account with emailID: shashikanth20@gmail.com im doing in https://usegalaxy.org/ website it says Process is terminated for that dataset thanks ...
written 16 months ago by gskbioinfo1430
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Comment: C: peaking calling in MACS shows error?
... i cant get reasons for that error ...
written 16 months ago by gskbioinfo1430
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peaking calling in MACS shows error?
... Hi everyone im trying to do peak calling using MACS in Galaxy(default settings) for dataset SRX681547. but analysis was not successful it fails i tried again. can anyone help me with this Thank you ...
macs peakcalling written 16 months ago by gskbioinfo1430 • updated 16 months ago by Jennifer Hillman Jackson23k

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