User: Carlos Andrés Caicedo

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Location:
Colombia/Medellín
Last seen:
2 months ago
Joined:
11 months, 3 weeks ago
Email:
c**************@udea.edu.co

Posts by Carlos Andrés Caicedo

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(Closed) Transcriptome assembly with Trinity-Jaccard_Clip
... Dear all May I implement a transcriptome assembly using the parameter --jaccard_clip in the wrapper of Trinity in Galaxy? Thanks ...
rna-seq assembly written 9 weeks ago by Carlos Andrés Caicedo0
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Answer: A: ribosomal RNA filtering
... I did not know RiboGalaxy. I am going to try it. Thank you very much. ...
written 8 months ago by Carlos Andrés Caicedo0
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ribosomal RNA filtering
... There exist some tool available at Galaxy to remove rRNA? The RNAseq data were generated using an Illumina Hiseq2500 Thanks Carlos ...
galaxy rna-seq written 8 months ago by Carlos Andrés Caicedo0
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"Maximun information quality filtering" trimming step in Trimmomatic
... Why is not present the Trimmomatic operation MAXINFO at the Galaxy instance of Trimmomatic? The "Maximun information quality filtering" (MAXINFO) performs an adaptive quality trim, balancing the benefits of retaining longer reads against the costs of retaining bases with errors. The information a ...
trimmomatic parameters tool tool-form options written 9 months ago by Carlos Andrés Caicedo0 • updated 9 months ago by Jennifer Hillman Jackson22k
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Comment: C: Length of reads in a RNAseq experiment
... Hello dear Jennifer Hillman-Jackson I have already made the question in Biostar I thank you for your help and I apologize for the mistake. Cheers! ...
written 10 months ago by Carlos Andrés Caicedo0
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Comment: C: Length of reads in a RNAseq experiment
... I am going to use Rockhopper. ...
written 10 months ago by Carlos Andrés Caicedo0
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(Closed) Length of reads in a RNAseq experiment
... Should all the reads of my experiment be of the same length if I am going to perform a de novo assembly? The raw data contained reads of the same length but after the trimming process by quality some of them are reduced. I would like to know if there are some effect in the downstream analysis with ...
assembly input rna-seq de-novo fastq written 10 months ago by Carlos Andrés Caicedo0 • updated 10 months ago by Jennifer Hillman Jackson22k

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