User: indranipoddar

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Posts by indranipoddar

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Comment: C: Liftover tool not working at UCSC
... Thank you for your reply. ...
written 23 months ago by indranipoddar0
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Liftover tool not working at UCSC
... Hello, I tried to convert hg18 coordinates in a BED format data with UCSC liftover and it is not working. Looks like it only works with chrN:start-end format. But I need to retain additional information in my BED file that's why I wanted to use BED format for this conversion. Next, I also tried Ga ...
galaxy liftover ucsc bed written 23 months ago by indranipoddar0 • updated 23 months ago by Jennifer Hillman Jackson25k
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Answer: A: Galaxy with Biomart export on Human GR37 build
... Thanks Jen. I wanted to use Bowtie2 from Galaxy to get un-mapped reads from fastq files to rRNA & mitochondrial sequences. So do I need to run 2 times Bowtie2 at Galaxy , one time on rRNA sequneces and another time mitochondrial sequences. Please let me know. Thanks, Indrani ...
written 2.0 years ago by indranipoddar0
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Galaxy with Biomart export on Human GR37 build
... Hello, I am interested to export some sequences (rRNA, mitochondrial RNA etc) with Biomart on human genome build GR37 to Galaxy, but when I tried to use Biomart from Galaxy , it only access Biomart with Human GR38. Please let me know how to access GR37 from Biomart to Galaxy. Thanks. ...
galaxy written 2.1 years ago by indranipoddar0

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