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Posts by rjames
... TopHat 2.1.1 and Cufflinks appear to work properly. After the tool cufflinks, the next tool in my pipeline is Cuffmerge. In running Cuffmerge, I use the reference for human genome: hg19.fasta. I downloaded the GRCh37/hg19 full data set as a twoBit file from http://hgdownload.soe.ucsc.edu/download ...
Comment: C: Phenotype data for Ballgown tool
... I have a most basic question: Where do the id names for the Ballgown phenotype csv table come from? For example my dataset names in the right-side history panel are: "193: Stringtie on data 2 and data 11:exon to transcript mapping" or "data 11" or "Stringtie on data 2 and data 11" ...
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