User: rjames

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rjames0
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Posts by rjames

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CuffMerge Fails to accept hg19 human Sequence Data
... TopHat 2.1.1 and Cufflinks appear to work properly. After the tool cufflinks, the next tool in my pipeline is Cuffmerge. In running Cuffmerge, I use the reference for human genome: hg19.fasta. I downloaded the GRCh37/hg19 full data set as a twoBit file from http://hgdownload.soe.ucsc.edu/download ...
cuffmerge cufflinks reference sequence written 5 months ago by rjames0 • updated 5 months ago by Jennifer Hillman Jackson24k
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Comment: C: Phenotype data for Ballgown tool
... I have a most basic question: Where do the id names for the Ballgown phenotype csv table come from? For example my dataset names in the right-side history panel are: "193: Stringtie on data 2 and data 11:exon to transcript mapping" or "data 11" or "Stringtie on data 2 and data 11" ...
written 7 months ago by rjames0

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