User: i b

gravatar for i b
i b330
Reputation:
330
Status:
Trusted
Location:
Last seen:
11 months ago
Joined:
5 years, 6 months ago
Email:
i******@gmail.com

Posts by i b

<prev • 36 results • page 1 of 4 • next >
0
votes
1
answer
367
views
1
answers
Comment: C: downloading to a local machine in bulk
... HI Martin, A link was created when I “export to file” I copied the link on a terminal and used wget (with/without quotes), but it is a not a tar that’s it’s being downloaded. If I open it, it looks like a script. ...
written 11 months ago by i b330
0
votes
1
answer
367
views
1
answers
Comment: C: downloading to a local machine in bulk
... hi martin, doesn't work always somehow. I have managed to download one history, but now, I cannot any longer. The link cannot be opened on the teminal as a directory containing data. any advice? thanks ib7 ...
written 11 months ago by i b330
0
votes
1
answer
352
views
1
answer
bulk data transfer from ENA
... hi, is there a way to transfer in bulk data from the ENA website to galaxy? rather then doing one sample at the time... thanks ibseq ...
galaxy written 11 months ago by i b330 • updated 11 months ago by Jennifer Hillman Jackson23k
1
vote
2
answers
303
views
2
answers
transferring bewtween two remote sites
... hi, how can I transfer data to galaxy if these are not on my local machine? Is there a way to get connected directly to my other remote site? thanks, ibseq ...
url data upload written 11 months ago by i b330 • updated 11 months ago by Bao Ho80
0
votes
2
answers
678
views
2
answers
Cufflinks Visualization
... Hi all, can anyone explain me wh how can I visualize cufflinks outputs in trackster? galaxy keep sending me errors thanks, ib ...
cufflinks rna-seq written 5.2 years ago by i b330 • updated 5.2 years ago by Jeremy Goecks2.2k
0
votes
1
answer
940
views
1
answer
Cuffcompare Input
... dear forum, I have two samples, treated and untreated. When I run cuffcompare (to created the gtf file for cuffdiff) do i have to give as input the cufflinks from both samples and the reference annotation or only the treated cuffliks? I very confused. any help much appreciated. thanks, ib ...
cufflinks rna-seq written 5.3 years ago by i b330 • updated 5.3 years ago by Jennifer Hillman Jackson23k
0
votes
0
answers
906
views
0
answers
Cuffdiff Variance Calculations
... Hello forum, I was reading some of the theory behind cuffdiff and how it calculates for DE genes. My question: if I do not have replicates, how does cuffdiff do the test statistic which is dependent on the variance? The manual says "Note that in order to calculate the test statistic T, we need to ...
cuffdiff rna-seq written 5.3 years ago by i b330
0
votes
1
answer
1.6k
views
1
answer
Cuffdiff Fpkm=0 "Not Significant"
... Dear forum, whoever knows this please tell me!!!!! Given two fpkm . e.g. fpkm 1=2922828 and fpkm 2=0, why cuffdiff does not calculate differential expression. those genes are listed in cuffdiff as not significant and the log2 fold change is infinite , either negative or positve...how do i consider ...
cuffdiff rna-seq written 5.3 years ago by i b330 • updated 5.3 years ago by Haiping Hao30
0
votes
2
answers
1.1k
views
2
answers
Cuffdiff Values Different For Same Sample
... Hello forum, I have ran cuffdiff with two samples, treated vs untreated, and had certain values as expressed in the output (isoform differential expression). When I ran it again, using a different treated sample, but SAME UNTREATED SAMPLE, the values assigned to the untreated are different. Why is ...
cuffdiff rna-seq written 5.3 years ago by i b330 • updated 5.3 years ago by Jennifer Hillman Jackson23k
0
votes
2
answers
452
views
2
answers
Job Information On Galaxy
... Hi, I am trying to open the "i" icon on galaxy to look at the information of each job, but this does not opne for old jobs, only the last recent one ... Any suggestion? Thanks, ib ...
galaxy written 5.3 years ago by i b330 • updated 5.3 years ago by Daniel Blankenberg ♦♦ 1.7k

Latest awards to i b

Popular Question 5.2 years ago, created a question with more than 1,000 views. For Cuffdiff Fpkm=0 "Not Significant"
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Cuffdiff Results Missing
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Reference Genome Format For Tophat
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Cuffdiff No Without Replicates

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 84 users visited in the last hour