User: amey.damle

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amey.damle30
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Posts by amey.damle

<prev • 13 results • page 1 of 2 • next >
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Exception Error in 'run_workflow' But in BackEnd the workflow starts running
... Hi Everyone , since i am working with galaxy with bioblend API. i wanted to run the workflow with passing their inputs for tools. the python API is there to run the workflow. well , I am having my project on PHP , and i have an array of dataset_map and marameter_map , I am passing their JSON woth Py ...
python galaxy api workflow written 2.2 years ago by amey.damle30
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Comment: C: Output files after Workflow run is completed
... Hi Jen , No problem at all. It was my mistake. Thanks. ...
written 2.2 years ago by amey.damle30
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Comment: C: Connection Error While using Galaxy API
... where will be the logs , i did not get the logs yet ? ...
written 2.2 years ago by amey.damle30
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Access Outputs through API
... Hi , I wanted to capture the output of workflow. when i run the workflow with 2 dataset inputs of fastq files. and after completion of workflow , i got few text and html files as output. and in the response of run_workflow method of **API** I got output_history and output_id's but I am not getting a ...
output galaxy api workflow written 2.2 years ago by amey.damle30 • updated 2.2 years ago by Jennifer Hillman Jackson25k
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(Closed) Output files after Workflow run is completed
... Hi Everyone, i am working on galaxy with bioblend API and when i have run a workflow with proper input datasets , the output history id and few output ID's are given in return. how can i get the output files of workflow using API. i am not getting any class function for this ? ...
output galaxy api workflow written 2.2 years ago by amey.damle30
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Download History galaxy API
... Hi I am using the python bioblend API to download the history of workflow. the first question is , if workflow is running the history which having datasets can download or not ?? I am using these below code : bGzip=True bWait=True oExport = gi.histories.export_history(sHisitoryID, bGzi ...
python galaxy history api written 2.2 years ago by amey.damle30
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Connection Error While using Galaxy API
... Hello , When i am executing **run_workflow** , the connection error is shown like this bioblend.galaxy.client.ConnectionError: Unexpected response from galaxy: 500: {"err_msg": "Uncaught exception in exposed API method:", "err_code": 0} can anyone had this error ?? Please give me any solutio ...
python galaxy api written 2.2 years ago by amey.damle30
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Answer: A: Error while Using 'run-workflow'
... Hello mam , I am not able to get which input is missing. all the inputs are correct i guess , i am bit confused in **dataset-map** , can you help me for this. these mapping is like '1': {'id': 'eaa9b06464bd346f', 'src': 'ld'} , 1 is just index , id is dataset id and src , i don't know , i just us ...
written 2.2 years ago by amey.damle30
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Comment: C: Upload fastq to 'Data Libraries' Using Bioblend Python library
... because the **upload_file_from_local_path** function is searching for files in my local machine. it giving me error of No such file or directory found. What to do ? ...
written 2.2 years ago by amey.damle30
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Comment: C: Upload fastq to 'Data Libraries' Using Bioblend Python library
... No , that files are in the same filesystem where the galaxy placed. and the file are accesible by the galaxy. i can not copy the files into local file system because they are too large as you knew the fastq files. ...
written 2.2 years ago by amey.damle30

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