User: blewettn

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blewettn10
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Posts by blewettn

<prev • 9 results • page 1 of 1 • next >
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Accessing galaxy web browser on Mac, running Galaxy on another PC via ssh
... I'm running a local Galaxy instance on a Linux GUI-less server via ssh from my Mac. After changing the config.ini host to 0.0.0.0, and running Galaxy, successfully connecting to server, I can't access the web interface on my Mac. Do I need to have a web browser on my Linux PC to use the web interf ...
server pc galaxy hosting written 16 months ago by blewettn10 • updated 16 months ago by Martin Čech ♦♦ 4.2k
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Answer: A: Galaxy fails on sh run.sh detects python2.6 but I also have anaconda python 2.7
... I ran galaxy in a Ubuntu 14 virtual environment, it runs through the script perfectly and allows server connection without error. The only reason I'm running centOS6 is because of the Illumina BCL2FASTq conversion program and Illumina suggestion. I can't find any rational reason to run centOS6. I ...
written 17 months ago by blewettn10
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does BCL2FASTq work on ubuntu 14 os
... I'm having issues with previous linux os and their python version playing with Galaxy. I'd like to just install ubuntu 14, and use galaxy without these headaches. I'm just curious if anyone has used BCL2FASTq on a ubuntu system? ...
bcl2fastq galaxy ubuntu written 17 months ago by blewettn10 • updated 17 months ago by Martin Čech ♦♦ 4.2k
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Answer: A: Galaxy fails on sh run.sh detects python2.6 but I also have anaconda python 2.7
... [root@hdlxnextseq01955786 galaxy]# /usr/bin/python --version Python 2.6.6 [root@hdlxnextseq01955786 galaxy]# python -V Python 2.7.12 :: Anaconda 4.1.1 (64-bit) [root@hdlxnextseq01955786 galaxy]# which python /root/anaconda2/bin/python I'll look into the file you suggest, thanks. ...
written 17 months ago by blewettn10
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Answer: A: Galaxy fails on sh run.sh detects python2.6 but I also have anaconda python 2.7
... what I meant by "Can I just modify a component of the run.sh script" is that the script for running galaxy seems to check python version twice, once early, which passes, and once later, which fails and returns python 2.6. So I'm just wondering if there's any way to either: force galaxy to look at ...
written 17 months ago by blewettn10
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Answer: A: Galaxy fails on sh run.sh detects python2.6 but I also have anaconda python 2.7
... It reports python 2.7.6 Very interesting regarding running as root, I've been doing this... Thanks for the interesting suggestion. ...
written 17 months ago by blewettn10
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Galaxy fails on sh run.sh detects python2.6 but I also have anaconda python 2.7
... I can't get a straight answer. Many people have this problem, I would like to find out how to point Galaxy at python 2.7. Can I just modify a component of the run.sh script, Galaxy fails about halfway through, below is the readout: [root@hdlxnextseq01955786 galaxy]# sh run.sh Collectin ...
anaconda python software error written 17 months ago by blewettn10 • updated 17 months ago by Remi Marenco80
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Answer: A: Python2.7 installed galaxy only sees 2.6
... It reports python 2.7.6 I should mention I'm running centOS6 on Illumina recommendation for BCL2FASTQ conversion. With centos6 apparently I can't just remove python2.6 and use 2.7 alone. I'm considering trying BCL2FASTQ in centos7 in virtual environment to see if that works, I'm guessing it will ...
written 17 months ago by blewettn10
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Python2.7 installed galaxy only sees 2.6
... ERROR: Your Python version is: 2.6 I have installed python2.7 including additional packages which are said to be important. I am very new to command line and I have been unable to find an answer to how I can point galaxy at python2.7 I can't seem to find the correct syntax to establish the PATH. ...
python software error written 17 months ago by blewettn10

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