User: avoltz

gravatar for avoltz
avoltz30
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5 months, 3 weeks ago
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1 year, 5 months ago
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a*****@umd.edu

Posts by avoltz

<prev • 23 results • page 1 of 3 • next >
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Comment: A: Limiting blast output on the Cloud
... Hi Jennifer, How would I know which Blast wrapper I am using? Amy ...
written 14 months ago by avoltz30
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Comment: C: Sailfish on the Cloud Failure
... Hi Enis, Thanks so much for submitting to github. Interesting that you are seeing the same thing. I'm hoping for a quick solution :) Amy ...
written 14 months ago by avoltz30
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Comment: C: Sailfish on the Cloud Failure
... I installed it via the tool shed on the cloud ...
written 14 months ago by avoltz30
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Sailfish on the Cloud Failure
... Fatal error: Exit code 127 () /mnt/galaxy/tmp/job_working_directory/000/373/tool_script.sh: line 9: sailfish: command not found Any ideas why SAILFISH is failing on the Galaxy Cloud? Did I miss installing something? ...
sailfish cloud written 14 months ago by avoltz30
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Limiting blast output on the Cloud
... I'm using galaxy on the cloud. Is there a way to limit blast output? For example, when I run command line blast I can use "max_target_seqs" to limit the output. I don't see this choice anywhere in the documentation. Does anyone know if there is a way to set something so I don't get so many blast hit ...
cloud blast parameters filters written 14 months ago by avoltz30 • updated 14 months ago by Bjoern Gruening4.8k
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Installing more tools: Galaxy on the Cloud (Cloudman)
... Hi , I don't see either Sailfish or Salmon anywhere in /home/ubuntu on the amazon web services cloud. Are they installed? Where? If not installed, do I need to install them myself and how do I do that? Thanks, Amy ...
aws install cloud admin tool written 14 months ago by avoltz30 • updated 14 months ago by Jennifer Hillman Jackson23k
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Comment: C: Is there a way to compress files on Galaxy before downloading?
... Hi Jennifer, I'm having trouble uploading new datasets with the Galaxy FTP tool. Is there any way you can tell me if I am out of room on Galaxy? I'm having trouble figuring out which part of the transfer is causing the problem. Thanks for your help Amy ...
written 14 months ago by avoltz30
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Comment: C: Deleted datasets did not reduce account disk quota usage
... Thanks for your help! I'm on the main Galaxy instance so I had to "delete permanently". This seems to have increased my space available. Thanks, Amy ...
written 14 months ago by avoltz30
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Deleted datasets did not reduce account disk quota usage
... Hi, I've deleted old histories and files from my account, but that didn't seem to affect the % of space I'm using. Is there something else I should be doing to delete old files to give myself more room? Thanks, Amy ...
dataset history admin perm-delete delete written 14 months ago by avoltz30 • updated 14 months ago by Jennifer Hillman Jackson23k
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Is there a way to compress files on Galaxy before downloading?
... Is there a way to compress files on Galaxy before downloading to my local machine? Thanks, Amy ...
dataset gz zip download compress written 14 months ago by avoltz30 • updated 14 months ago by Jennifer Hillman Jackson23k

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