Moderator: Mo Heydarian

gravatar for Mo Heydarian
Mo Heydarian790
Reputation:
790
Status:
Trusted
Location:
United States
Last seen:
2 months, 4 weeks ago
Joined:
5 years, 5 months ago
Email:
m*********@gmail.com

Posts by Mo Heydarian

<prev • 122 results • page 1 of 13 • next >
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Answer: A: Increasing galaxy memory
... Hello, An increase in storage quota on useGalaxy.org can be requested by emailing galaxy-bugs@lists.galaxyproject.org with a short explanation of why you need increased storage and for how long you will need it. Thanks for using Galaxy! Cheers, Mo Heydarian ...
written 5 months ago by Mo Heydarian790
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Comment: C: mRNA expression Count
... Please follow the tutorial I provided. In the tutorial normalized counts of transcripts are generated by DESeq2. You will need to provide the reference transcriptome (GTF) corresponding to your the organism you are working with: https://genome.ucsc.edu/cgi-bin/hgTables Thanks for using Galaxy! ...
written 5 months ago by Mo Heydarian790
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Answer: A: Save my data
... Hello, If you are using Galaxy all of your input, intermediate, and output files and visualizations are saved in your history. If this is not what you are asking about, please be more specific about what your goal is. Thanks for using Galaxy! Cheers, Mo Heydarian ...
written 5 months ago by Mo Heydarian790
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Comment: C: "Fold" a column from a table?
... For the example data you posted, you could select lines matching (or not matching) "NP_" using the "Select" tool. This tool will search and select rows matching (or not) a string you provide. ...
written 5 months ago by Mo Heydarian790
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Comment: C: "Fold" a column from a table?
... Try splitting the data into two files, the first with correctly formatted data and the second with rows that have blank entries. For the second file, you can add a placeholder using "Add column" and then rearrange the columns with the "Cut" tool. Once the second file has the same format as the fir ...
written 5 months ago by Mo Heydarian790
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Answer: A: mRNA expression Count
... Hello, You can perform RNA-seq analysis in Galaxy. Most of the standard tools for RNA-seq analysis are available on useGalaxy.org Please have a look at the following tutorial that has step-by-step instructions for dealing with RNA-seq data, including sample data for trial and error: https://galaxyp ...
written 5 months ago by Mo Heydarian790
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Answer: A: "Fold" a column from a table?
... Hello, You could use the "Group" or "Datamash" tools. You would group by the first column and "concatenate distinct" on the 2nd, 3rd, and 4th columns. In the case of your example, I would clean it up to remove the 4th line, as it has a different number of columns the the first three. I'd suggest usi ...
written 5 months ago by Mo Heydarian790
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Comment: C: Trinity on Queue
... Please try rerunning these jobs. ...
written 5 months ago by Mo Heydarian790
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Answer: A: Is useGalaxy.org working??
... Hello, The issues preventing jobs from running correctly on useGalaxy.org have now been fixed. Thanks for your patience and thanks for using Galaxy! Cheers, Mo Heydarian, Galaxy Project ...
written 5 months ago by Mo Heydarian790
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Answer: A: Server Statuses or Queue times
... Hello, Please see this post for an explanation and updates to the status of useGalaxy.org : https://biostar.usegalaxy.org/p/23801/#23804 Cheers, Mo Heydarian, Galaxy Project ...
written 5 months ago by Mo Heydarian790

Latest awards to Mo Heydarian

Teacher 5 months ago, created an answer with at least 3 up-votes. For A: RNAseq analysis starter
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: RNAseq analysis starter
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: RNAseq analysis starter
Centurion 6 months ago, created 100 posts.
Popular Question 6 months ago, created a question with more than 1,000 views. For bedTools - Genome file
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Asking for R and XML code examples for creating Galaxy Interface.
Scholar 7 months ago, created an answer that has been accepted. For A: Asking for R and XML code examples for creating Galaxy Interface.
Popular Question 8 months ago, created a question with more than 1,000 views. For bedTools - Genome file
Scholar 12 months ago, created an answer that has been accepted. For A: cuffdiff conditions related question
Scholar 16 months ago, created an answer that has been accepted. For A: cuffdiff conditions related question
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: cuffdiff conditions related question
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