User: nadja.chmel

gravatar for nadja.chmel
nadja.chmel10
Reputation:
10
Status:
New User
Location:
Last seen:
1 year, 5 months ago
Joined:
1 year, 6 months ago
Email:
n**********@uniklinik-freiburg.de

Posts by nadja.chmel

<prev • 7 results • page 1 of 1 • next >
1
vote
3
answers
485
views
3
answers
Comment: C: Problem with bam files for exome sequencing analysis
... Yes, it is indexed.. ...
written 18 months ago by nadja.chmel10
0
votes
3
answers
485
views
3
answers
Comment: C: Problem with bam files for exome sequencing analysis
... So the right build should be the hg19 ...
written 18 months ago by nadja.chmel10
0
votes
3
answers
485
views
3
answers
Answer: A: Problem with bam files for exome sequencing analysis
... I have checked the database set for my BAM file and it is the homo sapiens b37 and it accords with the information of the company. ...
written 18 months ago by nadja.chmel10
0
votes
3
answers
485
views
3
answers
Comment: C: Problem with bam files for exome sequencing analysis
... This is the result for my first BAM file with the flagstat tool. 57702389 + 0 in total (QC-passed reads + QC-failed reads) 402873 + 0 secondary 0 + 0 supplementary 8685951 + 0 duplicates 57298398 + 0 mapped (99.30%:-nan%) 57299516 + 0 paired in sequencing Well, I have no experience if this data i ...
written 18 months ago by nadja.chmel10
0
votes
3
answers
485
views
3
answers
Comment: C: Problem with bam files for exome sequencing analysis
... Thank you for your answer. Unfortunately, I do not know which build was used for the BAM files, because we instructed a company. But I will ask them. I tried the hg19 and the hg18 but both did not work. ...
written 18 months ago by nadja.chmel10
0
votes
3
answers
485
views
3
answers
Comment: C: Problem with bam files for exome sequencing analysis
... Thank you very much. Yes, the data is on usegalaxy.org. I will try this Flagstat tool now. These reads are from human. ...
written 18 months ago by nadja.chmel10
3
votes
3
answers
485
views
3
answers
Problem with bam files for exome sequencing analysis
... Hello everyone, I have one problem at the very beginning of the exome sequencing analysis, probably something wrong with the data format. In general, I have a patient with an unknown mutation and I want to compare the data with the parents to get some candidate genes. So far so good. For Whole Ex ...
bam data format sam to bam exome sequencing written 18 months ago by nadja.chmel10

Latest awards to nadja.chmel

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 69 users visited in the last hour