User: johanvn

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johanvn10
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Posts by johanvn

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Answer: A: MACS2 bdgdiff and Diffbind problem - job was terminated because it used more mem
... Thanks Jen I still can't figure out what is wrong - my bedgraph files from MACS2 callpeak are between 4.5 and 5.5 GB in size. would you say these are to large to run bdgdiff on main? ...
written 4 months ago by johanvn10
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MACS2 bdgdiff and Diffbind problem - job was terminated because it used more memory than it was allocated
... Hi all. I'm having som trouble running both MACS2 bgddiff and Diffbind. It keeps returning the error: "This job was terminated because it used more memory than it was allocated." I have 2 ChIP samples with 2 replicates of each. for each IP i also have an input sample. I have used MACS2 callpeak to ...
chip-seq choices job memory error written 4 months ago by johanvn10
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DEXseq error - "Error in library("DEXSeq") : there is no package called 'DEXSeq'"
... Dear all I want to analyse my RNA-seq data using DEXseq on the galaxy platform. I have made count tables of all my BAM files (output from Tophat - accepted hits) and the gtf file using DEXseq-count. When i try to run dexseq it doesn't even begin to run, it just reports the following error: Fatal er ...
rna-seq dexseq written 14 months ago by johanvn10 • updated 14 months ago by Jennifer Hillman Jackson25k
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TopHat tool missing?
... Hi all Is it just me or is anyone else having a hard time finding the TopHat tool? I have search for it and looked in every foler", but i cannot find it. Has it been removed or has the name changed - or am i simply blind? ...
usegalaxy.org hisat tophat rna-seq written 14 months ago by johanvn10 • updated 14 months ago by franklin_moreno0

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Popular Question 14 months ago, created a question with more than 1,000 views. For TopHat tool missing?

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