User: felipe_o_torquato

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New User
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Last seen:
2 years ago
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2 years, 2 months ago
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f****************@hotmail.com

Posts by felipe_o_torquato

<prev • 4 results • page 1 of 1 • next >
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How to convert SAM file to tabular ??
... Hi everyone, I am trying to convert the SAM file to tabular ?? Does anybody know? Is there any way to open SAM file in excel? many thanks in advance ...
tabular sam excel format convert written 2.1 years ago by felipe_o_torquato10 • updated 2.1 years ago by Jennifer Hillman Jackson25k
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How to calculate the Average Insert Size after mapping the reads to the reference genome using BWA
... Hi everyone, Having mapped the reads (paired-end) to a reference genome using BWA, I am trying to check the mapping results. Using the tool "Summary Statistics" it supposed to be possible calculate the average insert size (ISIZE - column 9 from the SAM file). However, the ISIZE column presents po ...
bam mapping insert alignment size written 2.1 years ago by felipe_o_torquato10 • updated 2.1 years ago by Jennifer Hillman Jackson25k
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Answer: A: Creating VCF file in Galaxy
... Hello Jennifer, we solved the problem. Many thanks! ...
written 2.2 years ago by felipe_o_torquato10
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VCF output from Mpileup tool
... Hi everyboy, I am trying to call SNP using the SAM Tools → mpileup in Galaxy. Since the input in **mpileupI** is BAM format, I converted FASTQ file to BAM format using NGS: Mapping → Map with BWA. Thereafter, I used this BAM file in **mpileupI** creating a compressed BCF file, which was convert ...
vcf mpileup galaxy igv pileup written 2.2 years ago by felipe_o_torquato10 • updated 2.2 years ago by Jennifer Hillman Jackson25k

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