User: rahul.sg98

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rahul.sg980
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Posts by rahul.sg98

<prev • 10 results • page 1 of 1 • next >
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Comment: C: blastx evalue problem
... Thanks for your comment. you are right, I am running Blastx on galaxy and command line, but on both cases, i am facing the problem. In case of Command line I have tried.. e-value cut off 0.00001, 1.e-5,1.0e-5,1.0e-05 ,but problem remains the same. ...
written 5 months ago by rahul.sg980
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blastx evalue problem
... Hello, I am using galaxy blastx and giving cut off e-value of 1.0e-5, but still e-value more than 1 is appearing in the result.Any suggestions are welcome. regards Rahul ...
blastx written 5 months ago by rahul.sg980 • updated 5 months ago by Jennifer Hillman Jackson23k
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Comment: C: rna seq read cleaning
... Hi, Thank you very much for your kind response. Actually, I have downloaded pair end RNA seq reads for assembly. reads were cleaned by trimmomatics: - adapter cleaning,q20, max read length 30bp. Assembled by Trinity with Group pairs distance- 500 bp,path reinforcement:- 50bp,min legth-200bp, assembl ...
written 8 months ago by rahul.sg980
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rna seq read cleaning
... Please suggest me a tool for removing bacterial contamination from RNA seq reads before assembly. ...
alignment rna-seq written 8 months ago by rahul.sg980 • updated 7 months ago by luca.marisaldi30
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CAP3 RNA seq Assembly
... Hello, I am using CAP3 programme at http://www.bioinformatics.nl/galaxy/.It is running nicely, but don't know what parameter it is following. The default parameter has not been displayed. I would be very grateful if someone can tell me how to access the parameter. Regards Rahul ...
rna-seq galaxy cap3 assembly written 9 months ago by rahul.sg980 • updated 9 months ago by Jennifer Hillman Jackson23k
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Answer: A: Galaxy toolshed information
... using usegalaxy.org... then how i will get accesses to the toolshed tools. ...
written 17 months ago by rahul.sg980
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Comment: C: Galaxy toolshed information
... Dear sir, Thanks for your reply, I am using galaxy main server and want to import trinity /MGEscan like tools. I am not the admin. So how can I import the new tool? I have gone through the procedure but it seems confusing to me. regards Rahul ...
written 17 months ago by rahul.sg980
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Galaxy toolshed information
... I want to import some tools from galaxy toolshed but not able to sort out how, though I have read the procedure. where will I find the configuration file? / dictionary file.. and editing. https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial Any comments and suggestion will be appr ...
galaxy toolshed written 17 months ago by rahul.sg980
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problem with diamond
... Hello. I am trying to use diamond but fail to do so, due there was no reference genome for me and I did not find any inbuilt NCBI database.Any comments will be appreciated. Regards Rahul ...
diamond blast rna seq assembly written 17 months ago by rahul.sg980 • updated 4 months ago by eltonsarmanho0
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regarding to mapping and ontology
... Hello, I am done with BLASTX against NR and Swiss-Prot database with my non-model plant transcript assembly at the galaxy, but not able to do the mapping and ontology in Blast2go. I have changed the out file of BLASTX to XML format, after loading in Blast2go sequence information is not v ...
blast2go mappping blast ontology rna-seq written 18 months ago by rahul.sg980 • updated 18 months ago by Jennifer Hillman Jackson23k

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