User: katherine.beaulieu014

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Posts by katherine.beaulieu014

<prev • 24 results • page 1 of 3 • next >
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Comment: C: Workflows
... Hi Geert, I know this was a long time ago but I can't seem to access the link you have posted on this topic. I am working on something similar at the moment and was hoping to view your examples in the hopes it will help me with my problem. Cheers, Katherine ...
written 20 months ago by katherine.beaulieu01480
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Comment: C: Dynamic Galaxy Tools like Upload Tool
... Is there a way to override this security setting? ...
written 23 months ago by katherine.beaulieu01480
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Comment: C: Dynamic Galaxy Tools like Upload Tool
... Hi Torsten, Will this work with an html page that isn't hosted? I just want to add the html file to the tool package. ...
written 23 months ago by katherine.beaulieu01480
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Comment: C: Dynamic Galaxy Tools like Upload Tool
... I am working on an export and import tool for irods in galaxy. Basically I can't have the user authenticate to get into irods using galaxy tool parameters. What I was doing when testing on a local instance is using files (password and username files) that irods creates upon authentication on the com ...
written 23 months ago by katherine.beaulieu01480
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Comment: A: Dynamic Galaxy Tools like Upload Tool
... I want to do authentication for another tool but galaxy doesn't offer a 'password' parameter because of the security issue of storing plain text passwords so I was hoping to just send my tool to a simple html form and send the password back to galaxy in the form of a text file where the password is ...
written 23 months ago by katherine.beaulieu01480
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Comment: C: Dynamic Galaxy Tools like Upload Tool
... Ok thank you for the information. Do you know if it has to be an existing website or can I put an html folder in the tool directory for the user to access? ...
written 23 months ago by katherine.beaulieu01480
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Comment: C: Upload Custom Tool
... My bad as well, reread that and realized it sounded a bit defensive! Thanks for the support! ...
written 23 months ago by katherine.beaulieu01480
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Dynamic Galaxy Tools like Upload Tool
... Hi everyone, I was wondering how tools like the uscs browser upload tool work. How can someone take a dataset from another website and add it as a history item to galaxy? I am looking to do something similar. ...
galaxy tool written 23 months ago by katherine.beaulieu01480 • updated 23 months ago by Torsten Houwaart50
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Comment: C: Upload Custom Tool
... I am currently working on a more effective solution to this problem, hopefully in the form of an authentication tool. Unfortunately, Galaxy doesn't have a password parameter and it isn't much safer to pass it in just as a plain text parameter. The iRods api also doesn't have the ability to generate ...
written 23 months ago by katherine.beaulieu01480
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Answer: A: Galaxy tool input and output files help please!
... Look at this forum post and try to copy the output file name for your output files. https://lists.galaxyproject.org/pipermail/galaxy-dev/2014-August/020361.html You output tag should look like a regular output tag, like for just one file. ...
written 23 months ago by katherine.beaulieu01480

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