User: umermehar10

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umermehar1010
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Posts by umermehar10

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Chromosome names and position names in VCF file
... Dear All I have a vcf file generated through happlotype caller in gatk. The chromosome and position names are very different in it like gi|996703411|ref|NW_015379183.1| Kindly somebody help me in this regard how to fix it or replace with normal positions and chromosome names. Its a rice genome data ...
vcf written 10 months ago by umermehar1010 • updated 10 months ago by Jennifer Hillman Jackson25k
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Answer: A: Spliting a VCF for some genotypes
... Thank You very much GUY Reeves for this valuable suggestion. ...
written 10 months ago by umermehar1010
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Spliting a VCF for some genotypes
... Dear All I have a VCF file of 250 genotypes developed using HaplotypeCaller at GATK tools. now I want to split a set of 200 individuals as new vcf file. Is is possible using GALAXY. Kindly help me in this regard by suggesting a workable solution if possible in galaxy. ...
galaxy vcf written 10 months ago by umermehar1010

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