User: Ross Hardison

gravatar for Ross Hardison
Ross Hardison270
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270
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Last seen:
2 years, 1 month ago
Joined:
11 years, 11 months ago
Email:
r***@psu.edu

Posts by Ross Hardison

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Comment: C: Failure to import a file from a history, in Galaxy Test
... Thanks, Jen!! Ross Hardison T. Ming Chu Professor of Biochemistry and Molecular Biology Director, Huck Institute for Comparative Genomics and Bioinformatics 304 Wartik Lab The Pennsylvania State University University Park, PA 16802 Phone: 814-863-0113 E-mail: rch8@psu.edu ...
written 2.1 years ago by Ross Hardison270
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Failure to import a file from a history, in Galaxy Test
... A coworker shared a file with me in a history on Galaxy Test, so that I could explore the deepTools that are on this site. I can see the file in the history, and the "import history" function executes to get me to a page that has the option to "start using this history". Unfortunately, when I click ...
galaxy written 2.1 years ago by Ross Hardison270 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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Error With Emboss Tools
... Using Galaxy test I tried to run three different ORF-finders from EMBOSS: "getorf", "sixpack" and "transeq". All of them gave the same error: "An error occurred running this job: sixpack: error while loading shared libraries: libX11.so.6: cannot open shared object file: No such file or directory" ...
galaxy written 11.1 years ago by Ross Hardison270
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Galaxy 2.2 Is Down
... None of the Galaxy servers except Galaxy1 and Galaxy cluster are responding. - Ross Ross Hardison T. Ming Chu Professor of Biochemistry and Molecular Biology The Pennsylvania State University 304 Wartik Laboratory University Park, PA 16802 e-mail: rch8@psu.edu phone: 814-863-0113 FAX: ...
galaxy written 11.3 years ago by Ross Hardison270
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Error Message When Importing Gc Content
... When I use the Table Browser proxy in Galaxy to import data on "GC content in 5bp intervals", I get the data I want (in wiggle format). However, the information associated with the query in Galaxy says: 3: UCSC: gc5Base (chr16:1-500000) error, format: wig, database: hg17 Info: Errors: (line 100010)- ...
galaxy written 11.3 years ago by Ross Hardison270 • updated 11.3 years ago by Dan Blankenberg130
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Critical Feedback
... This student was more adventurous. I think he actually could do more of what he tried with more experience (if he wants to get GNF data he should use that table), but there is some good feedback. I do agree with one comment - that we should mask out buttons that don't work on the Table Browser prox ...
galaxy written 11.3 years ago by Ross Hardison270
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Positive Feedback
... I unleashed a class of students on Galaxy, with options to do anything from working through tutorials to doing something advanced. I'm passing along some positive feedback. "Galaxy does not seem to be difficult to use, but since I was not sure what to try to do with a program that was new to me I d ...
galaxy written 11.3 years ago by Ross Hardison270
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Comment: C: Data Imports Hang
... Hi Dan - I'm using Safari on OS 10.4.7. David King tells me he had the same problem, using Firefox on OS 10.? Ross Hardison T. Ming Chu Professor of Biochemistry and Molecular Biology The Pennsylvania State University 304 Wartik Laboratory University Park, PA 16802 e-mail: rch8@psu.edu phone: 81 ...
written 11.4 years ago by Ross Hardison270
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Data Imports Hang
... I encountered a new problem while going through a Galaxy example for my class, using Galaxy2.2. When importing data from the UCSC Main Table Browser, the history column does the usual count-down of "refreshing in 10 sec, 9 sec, 8 sec, ...", but once it stops at "refreshing in 1 sec". Then it just sh ...
galaxy written 11.4 years ago by Ross Hardison270 • updated 11.4 years ago by Dan Blankenberg130
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Galaxy2.2 Not Accessible
... When I try to reach Galaxy2.2 (http://main.g2.bx.psu.edu/), it does not load, and I get the message: "Proxy Error The proxy server received an invalid response from an upstream server. The proxy server could not handle the request GET /. Reason: Error reading from remote server" Galaxy2.2-Test do ...
galaxy written 11.4 years ago by Ross Hardison270 • updated 11.4 years ago by Nate Coraor3.1k

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