User: Saskia Hiltemann

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4 months ago
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1 year, 8 months ago
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Posts by Saskia Hiltemann

<prev • 5 results • page 1 of 1 • next >
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Answer: A: mothur IS NOT WORKING ?
... Note: somebody else reported an issue with boost in relation to mother to me today and for them it was due to the order of conda channels (bioconda had to come before conda-forge) ..no clue if it could be the same on usegalaxy but could be something to check/a place to start ...
written 5 months ago by Saskia Hiltemann40
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Answer: A: mothur make.contigs error
... I can reproduce this; in stdout I see an "Invalid command" message. From the mothur logfile it appears that it runs mothur version 1.25, but the make.contigs command was not introduced until 1.26, and judging from the installed toolshed revision this is meant to be running version 1.33? ...
written 9 months ago by Saskia Hiltemann40
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Comment: C: Missing tool dependences with gray install box (Mothur tool)
... hmm, this seems to be a problem with the blast package (package_blast_2_2_26) in the tool shed. The files it tries to download from ncbi seem to have moved (e.g. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-x64-linux.tar.gz, which doesn't exist anymore) ...
written 20 months ago by Saskia Hiltemann40
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Comment: C: rearrange columns with Galaxy
... Hi :) Maybe you could try extracting each column (or group of columns) separately with the **cut** tool as suggested above and then use the **paste** tool (also in Text manipulation section) to paste them back together side by side in the order you want? ...
written 20 months ago by Saskia Hiltemann40
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Answer: A: Missing tool dependences with gray install box (Mothur tool)
... hmm, this worked for me not too long ago, I'll see if I can test it again soon, do you get any error message? ...
written 20 months ago by Saskia Hiltemann40

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