User: nazaninhoseinkhan

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1 year, 6 months ago
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Posts by nazaninhoseinkhan

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problem with visualizing VCF files in IGV
... Hi every body, I am trying to visualize a VCF file (VCFannotation output from Galaxy) in IGV. It seems this file is properly imported, but nothing is displayed. Moreover the message "no variants found" is reported. Can anybody help me to find out where the problem is? Thank you in advance Nazan ...
vcfannotation igv written 17 months ago by nazaninhoseinkhan10 • updated 7 weeks ago by supriyachakraworty5370
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Problem with using CuffMerge in Galaxy
... Dear all, I want to find differential expressed genes between two RNASeq samples in Galaxy. I want to use CuffMerge to merge assembled transcripts produced by Cufflinks. In the first box the list of all Cufflinks output is shown(when I choose multiple datasets), but when I choose the option to im ...
importing gtf galaxy cuffmerge rna-seq written 18 months ago by nazaninhoseinkhan10 • updated 18 months ago by Jennifer Hillman Jackson23k

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