User: daniel.tonge

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Posts by daniel.tonge

<prev • 13 results • page 1 of 2 • next >
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Answer: A: CuffDiff Replicates - which files do replicates 0, 1, 2 point to?
... Many thanks Jen...much appreciated. I also visualised the alignments in IGB to confirm as in this instance, one sample was significantly higher than the rest. All the best, D ...
written 12 days ago by daniel.tonge0
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CuffDiff Replicates - which files do replicates 0, 1, 2 point to?
... Our CuffDiff group tracking file lists the replicates as follows (second column); Control 1 Control 0 Control 2 Control 3 Control 4 Obese 0 Obese 1 Obese 2 Obese 3 Obese 4 Obese 5 Is there any way to determine conclusively which accepted hits file relates to each replicate number please? For examp ...
cuffdiff written 12 days ago by daniel.tonge0
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Extract command line from Galaxy run?
... Just a quick thought... I tend to run RNA-seq locally, whilst my PhD students may use Galaxy for convenience. Is there anyway that I can extract the command that underlies their Galaxy run, so that I could easily replicate what they have done locally (i.e. on a standard Linux server setup)?? Much ...
galaxy tophat rna-seq written 25 days ago by daniel.tonge0
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Answer: A: Upload Speed, FTP, Data transfer
... Please close this issue - it turns out there was an internal issue restricting bandwidth from our side. ...
written 9 weeks ago by daniel.tonge0
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(Closed) Upload Speed, FTP, Data transfer
... Morning all, I've been trying to move some fastq files (whole transcriptome data) onto Galaxy Main for the past three days yet on every occasion my upload speed dwindles to ~ 70Kb/sec... Im FTP 'ing to usegalaxy.org as I've always done and uploadin from within my University. Much appreciated, Da ...
ftp written 9 weeks ago by daniel.tonge0
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Comment: A: Could you recalculate my disk quota please
... Dear Galaxy, This issue is still persisting and preventing us from running any jobs...could you please try and recalculate again? There is no data on the account but it still registers ~ 160 Gb. Best wishes, D ...
written 9 months ago by daniel.tonge0
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Comment: A: Could you recalculate my disk quota please
... Email sent - thank you for looking into this. Best wishes, Dan ...
written 9 months ago by daniel.tonge0
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Could you recalculate my disk quota please
... Good morning, Could you please recalculate my disk quota please...the history has been purged and shows just 60Gb but still states it is over the limit. Best wishes, D ...
galaxy written 9 months ago by daniel.tonge0 • updated 9 months ago by Martin Čech ♦♦ 3.7k
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Answer: A: Conflict There was a conflict when trying to complete your request. Error gene
... Link emailed as requested. Many thanks for your prompt reply. Best wishes, D ...
written 10 months ago by daniel.tonge0
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Conflict There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'
... Good afternoon, I keep getting the following error when trying to visualise data using galaxy main - this also occurs if I try to select view in UCSC / Ensemble / IGB; Conflict There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attr ...
rna-seq written 10 months ago by daniel.tonge0 • updated 6 months ago by annen0

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