User: claudiorivero92

Reputation:
0
Status:
New User
Location:
Last seen:
5 months, 3 weeks ago
Joined:
1 year, 8 months ago
Email:
c**************@gmail.com

Posts by claudiorivero92

<prev • 7 results • page 1 of 1 • next >
0
votes
0
answers
142
views
0
answers
(Closed) STAR parameters in plants genomes
... Dear all, I want to use the STAR alignment tool available in usegalaxy.org, i know that the default parameters are optimized for mammalian genomes, in my case it's for plant genomes, particularly for legumes. So which parameter i should to change, in my alignment? I know that the intron size is an i ...
plant star rna-seq written 5 months ago by claudiorivero920
0
votes
1
answer
156
views
1
answer
STAR parameters in plants genomes
... Dear all, I want to use the STAR alignment tool available in usegalaxy.org, i know that the default parameters are optimized for mammalian genomes, in my case it's for plant genomes, particularly for legumes. So which parameter i should to change, in my alignment? I know that the intron size is an i ...
plant star rna-seq written 5 months ago by claudiorivero920 • updated 5 months ago by colindaven0
0
votes
2
answers
498
views
2
answers
Answer: A: Cufflinks generated duplicated features
... I solved the problem just running the gff3 file in to the gffread tool, and transform it into gtf2. Cheers ...
written 5 months ago by claudiorivero920
0
votes
2
answers
498
views
2
answers
Cufflinks generated duplicated features
... Hi everyone i post my situation because i have this error: > GFF Error: duplicate/invalid 'transcript' feature > ID=PHASIBEAM10F001038T1 [FAILED] I asked here before and answered me delete the duplicated values, so i think that these duplicated values are in my gff3 file in the annotation o ...
cuffdiff gff3 cufflinks gtf rna-seq written 20 months ago by claudiorivero920
0
votes
1
answer
733
views
1
answer
Tool error "OSError: [Errno 28] No space left on device"
... hi, i'm doing a cufflinks assay, and sistem always return the error: The Galaxy framework encountered the following error while attempting to run the tool: > Traceback (most recent call last): File > "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/jobs/runners/pulsar.py", > line 307, i ...
cufflinks usegalaxy.org job error written 20 months ago by claudiorivero920 • updated 20 months ago by Jennifer Hillman Jackson23k
0
votes
1
answer
367
views
1
answer
Fatal Error Cuffmerge
... I have this error, anyone know how i solve it. Error running cuffmerge. [Mon Apr 25 09:04:26 2016] Beginning transcriptome assembly merge [Mon Apr 25 09:04:26 2016] Preparing output location cm_output/ [Mon Apr 25 09:05:12 2016] Converting GTF files to SAM [09:05:12] Loading reference annotation. E ...
rna-seq cufflinks cuffmerge fatal error written 21 months ago by claudiorivero920 • updated 21 months ago by Jennifer Hillman Jackson23k
0
votes
1
answer
748
views
1
answers
Answer: A: Cuffmerge error - how to fix it
... I'm not pretty sure but did you check if put all your data?, i mean if it has selected, not only make it appear in the input box. Tell me if it works ...
written 21 months ago by claudiorivero920

Latest awards to claudiorivero92

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 85 users visited in the last hour