User: claudiorivero92

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Posts by claudiorivero92

<prev • 7 results • page 1 of 1 • next >
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(Closed) STAR parameters in plants genomes
... Dear all, I want to use the STAR alignment tool available in usegalaxy.org, i know that the default parameters are optimized for mammalian genomes, in my case it's for plant genomes, particularly for legumes. So which parameter i should to change, in my alignment? I know that the intron size is an i ...
plant star rna-seq written 11 months ago by claudiorivero920
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STAR parameters in plants genomes
... Dear all, I want to use the STAR alignment tool available in usegalaxy.org, i know that the default parameters are optimized for mammalian genomes, in my case it's for plant genomes, particularly for legumes. So which parameter i should to change, in my alignment? I know that the intron size is an i ...
plant star rna-seq written 11 months ago by claudiorivero920 • updated 11 months ago by colindaven0
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Answer: A: Cufflinks generated duplicated features
... I solved the problem just running the gff3 file in to the gffread tool, and transform it into gtf2. Cheers ...
written 11 months ago by claudiorivero920
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Cufflinks generated duplicated features
... Hi everyone i post my situation because i have this error: > GFF Error: duplicate/invalid 'transcript' feature > ID=PHASIBEAM10F001038T1 [FAILED] I asked here before and answered me delete the duplicated values, so i think that these duplicated values are in my gff3 file in the annotation o ...
cuffdiff gff3 cufflinks gtf rna-seq written 2.1 years ago by claudiorivero920
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Tool error "OSError: [Errno 28] No space left on device"
... hi, i'm doing a cufflinks assay, and sistem always return the error: The Galaxy framework encountered the following error while attempting to run the tool: > Traceback (most recent call last): File > "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/jobs/runners/pulsar.py", > line 307, i ...
cufflinks usegalaxy.org job error written 2.1 years ago by claudiorivero920 • updated 2.1 years ago by Jennifer Hillman Jackson25k
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Fatal Error Cuffmerge
... I have this error, anyone know how i solve it. Error running cuffmerge. [Mon Apr 25 09:04:26 2016] Beginning transcriptome assembly merge [Mon Apr 25 09:04:26 2016] Preparing output location cm_output/ [Mon Apr 25 09:05:12 2016] Converting GTF files to SAM [09:05:12] Loading reference annotation. E ...
rna-seq cufflinks cuffmerge fatal error written 2.2 years ago by claudiorivero920 • updated 2.2 years ago by Jennifer Hillman Jackson25k
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Answer: A: Cuffmerge error - how to fix it
... I'm not pretty sure but did you check if put all your data?, i mean if it has selected, not only make it appear in the input box. Tell me if it works ...
written 2.2 years ago by claudiorivero920

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